Detail information of GWHGAAEX008823/evm.TU.scaffold_23.129
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|225848356|ref|YP_002728519.1| | 3.00E-44 | ATP-citrate synthase (ATP-citrate (pro-S-)-lyase)(citrate cleavage enzyme) [Sulfurihydrogenibium azorense Az-Fu1] |
| KOG | KOG1254 | 2.00E-86 | ATP-citrate lyase |
| nr | gi|743783584|ref|XP_010921453.1| | 1.01E-92 | PREDICTED: LOW QUALITY PROTEIN: ATP-citrate synthase beta chain protein 1-like [Elaeis guineensis] |
| Swissprot | tr|Q93VT8|ACLB1_ORYSJ | 2.00E-93 | ATP-citrate synthase beta chain protein 1 |
| trEMBL | tr|M0S2U5|M0S2U5_MUSAM | 5.00E-93 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P24880_001} |
| TAIR | AT3G06650 | 2.00E-86 | ATP-citrate lyase B-1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 3286856 | 3287777 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008823
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00285.20 | Citrate_synt | 72 | 203 | 1.10E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046912 | Molecular Function | transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.110 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.000 |
| SRR5643514 | five period of Gastrodia elata | 0.150 | |
| SRR5643515 | five period of Gastrodia elata | 0.000 | |
| SRR5643524 | five period of Gastrodia elata | 0.250 | |
| SRR5643525 | five period of Gastrodia elata | 0.200 | |
| SRR5643528 | five period of Gastrodia elata | 0.200 | |
| SRR5643658 | five period of Gastrodia elata | 0.150 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.220 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 0.00 |