Gene detail

Detail information of GWHGAAEX008828/evm.TU.scaffold_23.135

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|432332244\|ref\|YP_007250387.1\|	3.00E-18	parvulin-like peptidyl-prolyl isomerase [Methanoregula formicica SMSP]
KOG	KOG3258	1.00E-70	Parvulin-like peptidyl-prolyl cis-trans isomerase
nr	gi\|488726182\|gb\|AGL08211.1\|	2.67E-84	peptidyl-prolyl cis-trans isomerase [Arachis hypogaea]
Swissprot	tr\|Q9LEK8\|PIN1_DIGLA	3.00E-13	Peptidyl-prolyl cis-trans isomerase Pin1
trEMBL	tr\|B9RLW3\|B9RLW3_RICCO	1.00E-80	Rotamase, putative {ECO:0000313\|EMBL:EEF47838.1}
TAIR	AT1G26550	1.00E-70	FKBP-like peptidyl-prolyl cis-trans isomerase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	3548001	3583272	+

Transcript Sequence
>GWHTAAEX008828 ATGGGTAAAGATTCTAAGTCCAAGGAACCAACAAAAAAGGGGAAAGGAAAGCAGCCTTCCAGCGGAGAGGATGAGAATGCTTCCAAGGGTAAAGGGAAGAGCAAGTCGGGAGATGAGCTTGGCACCTGTACTTTTGTCAAAGCAAGGCATATCTTATGCGAGAAACAAGGGAAGATCAACGAAGCATACAAGAAATTACAAGAAGGTTGGTTGGACAATGGAGACAAGGTCCCTCCTGCAGAGTTTGCCAAGGTAGCGGCAGAGTATTCAGAATGTCCTTCAGGAAAGAAAGGTGGAGATCTTGGATGGTTTCCTAGAGGGAAAATGGCAGGACCCTTTCAGGAAGTTGCATTTAACACGCCTGTTGGTGCTACCACTGTACCCTTCAAATCAACGCATGGATATCATATCATACTCTGCGAGGGGAGGAAGAATTAA

Network for GWHGAAEX008828

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13616.5	Rotamase_3	46	140	4.00E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003755	Molecular Function	peptidyl-prolyl cis-trans isomerase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	876.440
SRP064423	SRR2545915	Juvenile tuber	662.830
SRP108465	SRR5643513	five period of Gastrodia elata	273.270
	SRR5643514	five period of Gastrodia elata	305.290
	SRR5643515	five period of Gastrodia elata	244.180
	SRR5643524	five period of Gastrodia elata	246.690
	SRR5643525	five period of Gastrodia elata	543.200
	SRR5643528	five period of Gastrodia elata	449.460
	SRR5643658	five period of Gastrodia elata	504.530
	SRR5643659	five period of Gastrodia elata	248.100
	SRR5643660	five period of Gastrodia elata	286.480
	SRR5643661	five period of Gastrodia elata	259.710
	SRR5643662	five period of Gastrodia elata	262.000
	SRR5643663	five period of Gastrodia elata	282.510
	SRR5643664	five period of Gastrodia elata	273.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	500.620
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	132.530
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	490.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	555.190
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	750.330
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	804.650
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	597.970
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	643.580
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	435.740
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	600.350
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	457.510
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	457.510
SRP279888	Gastro	Gastrodia elata tuber	317.13
	Juven	Juvenile tuber	215.92
	Mother_Gastro	Mother tuber of Gastrodia elata	192.56
	Mother_Juven	Mother tuber of Juvenile	198.32