Gene detail

Detail information of GWHGAAEX008829/evm.TU.scaffold_23.136

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0160	Myosin class V heavy chain
nr	gi\|672123964\|ref\|XP_008785355.1\|	PREDICTED: myosin-11-like [Phoenix dactylifera]
Swissprot	tr\|F4HWY6\|MYO11_ARATH	Myosin-11
trEMBL	tr\|W1PFM8\|W1PFM8_AMBTC	Uncharacterized protein {ECO:0000313\|EMBL:ERN06519.1}
TAIR	AT1G54560	Myosin family protein with Dil domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	3608131	3645822	-

Transcript Sequence
>GWHTAAEX008829 ATGTTCCAGTTTAGTCGCAGTCACTTAGGATCACTGGCGACCGCCCATAACAGTTGCCTCCCAGCCTCTTCACCTCCTCAAGACATGGCCAAACTCTTTCTTTATGTACATTTGGGAACCCCAGTTAATATCATTGTTGGCTCCCATGTTTGGATTGAAGACTCTGTCGCCTGCTGGATTGATGGACAAGTTACAAAAATCACTGATCAGGATGCTGAAATTCAAACTACTAATGGGAAAACAGTTGTTGAAAAACTATCAAAAATATTTCCCAAAGACATGGAGGCACCCCCAGGAGGAGTGGATGACATGACAAAGCTATCCTATCTGCATGAACCTGGAGTTCTGCATAACATGTCAACTAGATATGAACTTAATGAAATTTATACTTACACAGGAAGCATTCTTATTGCTGTGAATCCGTTTCAAAGATTATCTCACCTCTATGATCTTCACATGATGGAGCAATATAAAGGAGCACCTTTTGGAGAACTAAGCCCTCATGTTTTTGCAGTTGCAGATGCTGCATACAGAGCAATGATCAATGAGAGAAAAAGCAACTCTATATTAGTCAGCGGTGAAAGTGGTGCTGGTAAAACTGAAACAACTAAGATGCTTATGCGCTATCTTGCCTATATGGGTGGCCGTACTGCAACAGAAGGCAGAACTGTAGAGCAGCAAGTTCTAGAATCAAACCCTGTTCTTGAGGCATTTGGCAATGCGAAGACTGTTCGTAATAATAATTCCAGCCGATTTGGTAAATTTGTAGAGATCCAATTTGATAATAAAGGAAGGATATCTGGAGCTGCCATCAGGACGTACCTTCTTGAAAGGTCAAGAGTCTGCCAAATTTCGGATCCTGAGCGCAATTACCATTGTTTCTATCTTTTATGTGCAGCTCCTCCCAAGGATATTGAGAAATATAAGTTAGGGGACCCAAGATCATTTCACTATCTTAACCAATCAAATTGTTATGAGTTGGTTGGTGTAAGTGATGCTAAAGAATATTTGGCCACAAGGAGGGCTATGGATATTGTTGGGATTAGTGGACAGGAACAGGATGCAATATTTAGGGTTGTGGCTGCTATTCTTCACCTTGGAAACATTGATTTTGCTAAGGGTCAAGAAATTGATTCATCAGTTCTAAAAGATGAGAAGTCTAACTTCCACCTAAAGATGACTGCCGAACTTCTCATGTGTGATCCACAGGCCTTGGAAGATGCACTTTGTAAGCGTGTAATGGTAACACCAGAAGAAGTTATAAAGAGATCTCTAGATCCTGTTGCTGCTACTGCAAGCAGAGATGCCTTGGCAAAGACAACATACTCTCGATTATTTGACTGGCTTGTTGATAAGATTAATAACTCAATCGGGCAAGATTCAAAGTCTAAGTCTCTCATTGGTGTTCTTGATATATATGGTTTTGAGAGTTTTAAAACAAACAGTTTTGAGCAGTTTTGTATTAACTTTACAAATGAAAAACTTCAACAACATTTCAATCAGCATGTCTTCAAAATGGAACAGGAAGAGTACACCAAAGAGGAAATTGACTGGAGCTACATTGAGTTTGTTGATAATCAGGACATCTTAGACCTCATTGAAAAGAAACCTGGAGGAATCATTGCTCTGGTTGATGAAGAATGCATGTTTCCAAAATCAACTCACGTGACATTTTCTCATAAGCTTTATCAAACATTTAAGTCACACAAATGCTTTGTCAAACCTAAGTTGTCTCGAACTGACTTTACCATTTGCCACTATGCTGGAGAGGTGCAATATCAATCTGACCAATTTCTAGACAAAAATAAAGACTACGTTGTTGCAGAACACCAAGACTTATTGACTGCTTCAAACTGCCCTTTCATATCAGGCCTTTTTCCTCCCTTGCCTGAGGAGACATCAAAATCTTCTAAATTTTCTTCCATTGGTACTCGTTTTAAGCAACAACTTCAATCATTGATGGAGACGTTGAATTCAACTGAGCCACATTATATTAGATGTGTGAAGCCAAACAATCTTCTTAAACCTTCCGTCTTTGAGAATGTTAATGTCATGCAGCAATTGCGTTGTGGTGGTGTATTGGAAGCTATCAGGATTAGTTGTGCAGGATATCCTACCCGTCGCACATTTTATGACTTCCTTCATCGATTTGGTGTTCTTGCTCCAGAAGTTTTAGAAGCAAAATACAATGATGAGAAGGCTGCTTGCAGAAAAATTTTGGAGAAAAAGGGTCTAAAGGGCTGGCAGATAGGAAAAACTAAAGTTTTCCTCAGAGCTGGTCAGATGGCTGAATTAGATGCTCGGAGGGCTGAAGTACTTGGGAATGCTGCTAAAGCTATTCAGCGCCAAATACGAACACACTTTACTCGGAAATGGTTTGTTGCAATTAGAACGTTCAGCATTCTAGTACAGTCATTGTGGAGAAGAAGCCTAACACAAAAACTTTATCAACATATGAGAAAGGAGGAAGCTGCTGCTAAAATACAGAAAATTTTTCGAGGTTTCTTTGTGAAAAAGAAATACACGTGTTTAAGGGTTTCAGTTCATGTTCTTCAAACTGGCATAAGGGCTATGCTTGCCCGAAATGCTTTTCGATTTAGGAGGCAAACAAAGGCAGCAACTAAGATTCAGGCTCATTGGCATTGCCACAAAACTCACTTGTACCACAAAAAGTTAAGGAATGCATCAATTGTAACCCAAACTCAGTGGAGGGGAAGGGTTGCTAAAAGAGAGCTCAGGAAGCTTAAAATGGCTGCCAGGGAAACTGGGGCACTCAAGGAAGCAAAGCACAAGCTTGAAAAAAATGTGGAAGAGCTAACATGGCGCTTGCAACTGGAGAAACGCATGAGGACAGACTTGGAGGAAGCAAAGACTCAAGAGATTACAAAATTTCAGAACTCTTTGCAAGCATTACAGTTTAAATTGGATGAGGCTAATGCATTACTTGTTAGAGAAAGAGAGGCAGCAAAAAAAGCAGTTGAAGATGCACCTCCTGTTGTCAAGGAAATTACCGTCCTTGTTCAGGATACTGAGAAGATTAAATCATTAACAGCAGAGATTGAGCAGTTTAAGGTTTCTTTAGAATCAGAAAAGGTAAGAGCTGATGAATTTGAAAGAAAATATATTGAAGCTCACAGAACGAGTGAAGAAAGACCAGCAAAGTTGGAAGAACTTCAAGAGAAAGCACACCATCTTCAAGAGTCTTTGAATAG

Network for GWHGAAEX008829

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02736.18	Myosin_N	47	83	2.20E-06
PF00063.20	Myosin_head	101	758	1.00E-255
PF00612.26	IQ	775	793	0.13
PF00612.26	IQ	823	841	0.0049

Protein Sequence

>GWHPAAEX008829
MFQFSRSHLGSLATAHNSCLPASSPPQDMAKLFLYVHLGTPVNIIVGSHVWIEDSVACWIDGQVTKITDQDAEIQTTNGKTVVEKLSKIFPKDMEAPPGGVDDMTKLSYLHEPGVLHNMSTRYELNEIYTYTGSILIAVNPFQRLSHLYDLHMMEQYKGAPFGELSPHVFAVADAAYRAMINERKSNSILVSGESGAGKTETTKMLMRYLAYMGGRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDNKGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPPKDIEKYKLGDPRSFHYLNQSNCYELVGVSDAKEYLATRRAMDIVGISGQEQDAIFRVVAAILHLGNIDFAKGQEIDSSVLKDEKSNFHLKMTAELLMCDPQALEDALCKRVMVTPEEVIKRSLDPVAATASRDALAKTTYSRLFDWLVDKINNSIGQDSKSKSLIGVLDIYGFESFKTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDILDLIEKKPGGIIALVDEECMFPKSTHVTFSHKLYQTFKSHKCFVKPKLSRTDFTICHYAGEVQYQSDQFLDKNKDYVVAEHQDLLTASNCPFISGLFPPLPEETSKSSKFSSIGTRFKQQLQSLMETLNSTEPHYIRCVKPNNLLKPSVFENVNVMQQLRCGGVLEAIRISCAGYPTRRTFYDFLHRFGVLAPEVLEAKYNDEKAACRKILEKKGLKGWQIGKTKVFLRAGQMAELDARRAEVLGNAAKAIQRQIRTHFTRKWFVAIRTFSILVQSLWRRSLTQKLYQHMRKEEAAAKIQKIFRGFFVKKKYTCLRVSVHVLQTGIRAMLARNAFRFRRQTKAATKIQAHWHCHKTHLYHKKLRNASIVTQTQWRGRVAKRELRKLKMAARETGALKEAKHKLEKNVEELTWRLQLEKRMRTDLEEAKTQEITKFQNSLQALQFKLDEANALLVREREAAKKAVEDAPPVVKEITVLVQDTEKIKSLTAEIEQFKVSLESEKVRADEFERKYIEAHRTSEERPAKLEELQEKAHHLQESLN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding
GO:0005524	Molecular Function	ATP binding
GO:0003774	Molecular Function	motor activity
GO:0016459	Cellular Component	myosin complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.170
SRP064423	SRR2545915	Juvenile tuber	23.680
SRP108465	SRR5643513	five period of Gastrodia elata	8.200
	SRR5643514	five period of Gastrodia elata	13.840
	SRR5643515	five period of Gastrodia elata	10.920
	SRR5643524	five period of Gastrodia elata	10.820
	SRR5643525	five period of Gastrodia elata	14.280
	SRR5643528	five period of Gastrodia elata	10.620
	SRR5643658	five period of Gastrodia elata	15.010
	SRR5643659	five period of Gastrodia elata	9.830
	SRR5643660	five period of Gastrodia elata	11.430
	SRR5643661	five period of Gastrodia elata	8.060
	SRR5643662	five period of Gastrodia elata	5.740
	SRR5643663	five period of Gastrodia elata	10.560
	SRR5643664	five period of Gastrodia elata	7.880
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.860
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.980
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	21.920
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.630
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.810
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.610
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.990
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.790
SRP279888	Gastro	Gastrodia elata tuber	11.62
	Juven	Juvenile tuber	8.38
	Mother_Gastro	Mother tuber of Gastrodia elata	3.04
	Mother_Juven	Mother tuber of Juvenile	4.65