Gene detail

Detail information of GWHGAAEX008835/evm.TU.scaffold_23.142

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|158334647\|ref\|YP_001515819.1\|	8.00E-16	lipase [Acaryochloris marina MBIC11017]
KOG	KOG4569	1.00E-99	Predicted lipase
nr	gi\|743773969\|ref\|XP_010917339.1\|	0	PREDICTED: uncharacterized protein LOC105041962 [Elaeis guineensis]
Swissprot	tr\|O82274\|PLA19_ARATH	3.00E-06	Phospholipase A1-IIbeta
trEMBL	tr\|K4NZ15\|K4NZ15_ELAGV	0	Lipase {ECO:0000313\|EMBL:AFV50601.1}
TAIR	AT5G67050	1.00E-99	alpha/beta-Hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	3789542	3792135	+

Transcript Sequence
>GWHTAAEX008835 GCATGGATGGCCTCATATAAAAGCATAGCAACTTTATATGAAAAACTATAAATCTAATTACATAATACATAAAAATGCAAAACAGCGAAAAATAATCATTTTTCTAAGATAGCTTCGTAAACATCTCTCGATGGCTTCAATCTCCTTAGCTGATTACTTCAATATTTGATAATAGTAATTTTGTGAGTAACAGTCCTAGAGTCGGGTCCAGCAACCCTGCTTCTTCCAGCTTCAAGCAGCTCAACAATATGTCATAATGGAAGAAGAAAGCATTAATGCACGCTCAAAACGCCAACAGTCCACACGAACACCAAGCCTTCTCCCACTGCCGTAGTGCCAGCCCACAATATGACTCCAAAACTAGAGTGCAAAAGGGCTCTCTCTTCTATTTAAAGGGCCTCAACCTTCATCTATTATTCTCACACTTCTCTCTTAAGCCCACTCCCTCTTCTTCTGCTCGAGCTTCTTTCATCCATTAATGGCAGGTTATAACAGCCAATACTTGATATTCCGGCCAGAGAAGATGAGATGGTTTCATATATTTTGCCTCTTAATTCTTAGGCGCCGAAGCCTTACAGCGTATAATTTTGTTGAGGCGGAAGCTCCAATTCCTGCTGATGCTATCACTGTTCTCACTCTGTTTATTCAAAAAACACTCTCAAGTATTAGCAAGCCGTTGAAGTGCTTAGGGCTTTTTGTGGAGTTTTTCCTGAACTTGCTCTCACTTAATGCTGGAATATTAGGACTTATCAAGCGCATTATAACAGTATCGGTTGTGATCCCGAAGCGCGATGCTGCGAATTTCCGGAGCATAATCGGCCACATAGACGGGCGGGTGAAGCTTGGTGAGGCCCAGTCGCCGTCCGATCTAAGCAGCGGCACAGCTCTGGTGGACTTCACCATGCTCGCTTCCAAGATTGCCTACGAGAATCCGTCCTACATTCAGAACACAGTGGATAATATCTGGAAGATGCACTTTGTTGGCTTCTACAGTTGCTGGAACAGTACAATTCTTGGGGGACACGCGACGCAAGCCTACATCGCATGCGACAAAGAGACGGACGCGGAGTTGATCGTGGTGGCATTCCGCGGCACGGAGCTGTTCAACGCTCAGGATTGGTCCACGGACGTGAACCTGTCGTGGCTGTCTGCCAACAAGCTCGGAAACCTGCACACGGGCTTTCTCCAAGCGCTGGGCCTTCAAGACGACAAGAGCTTCCTGCTGGGCTTCCCGCCCAACCTGACGTGGCCACCGGACAAGCCGGTGGCCTACTACGCCCTCCGCGACGCCCTTCGGTCGCTCCTCAAGGTCCACAGGAAGGCCAAGCTGGTGGTCACCGGCCATAGCCTGGGCGGCGCCCTTGCCTGCCTCTTTCCCGCCCTCCTCGCCTTCCACGCCCAGGCCGACCTCCTCTCCTCCCTCCTCGGAGTCTTCACCTACGGCCAGCCCAGGGTCGGAGACGCCCGCTTCGGAGCTTACATGACGGCCGTGGCCAGGGGAACCTACTACCGAATGGTCTACAGGTTCGATGTTGTGCCGCGTGTCCCCTTCGACGCCGCGCCCGTCTCTCTCTTCAAGCACTGCGGCACGTGCGTCTACTACAAGACCTGGAGTCACGCTCAGGTGGTTGACGATGCGCCTAATCCGAATTACTTTGATCCGCTGTACGCCGTGCCGATGTACCTGAATGCGTGGGGAGACCTTCTGCAAGCTTTTTTTATAGGGTGGACGAAAGGCAGGGAGTACAGAGAAGGCATTGTCTCCATACTCTATAGAACTGCAGGGCTGATAATTCCAGGCATTTCCTCCCACAGCCCGAGAGATTATGTCAATGGAGGAAGGCTGGCTAAGATTCAGCCTAACACCATTCTCTGA

Network for GWHGAAEX008835

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01764.24	Lipase_3	200	359	4.30E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006629	Biological Process	lipid metabolic process

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.410
SRP064423	SRR2545915	Juvenile tuber	0.230
SRP108465	SRR5643513	five period of Gastrodia elata	2.630
	SRR5643514	five period of Gastrodia elata	0.630
	SRR5643515	five period of Gastrodia elata	5.210
	SRR5643524	five period of Gastrodia elata	1.130
	SRR5643525	five period of Gastrodia elata	15.540
	SRR5643528	five period of Gastrodia elata	13.790
	SRR5643658	five period of Gastrodia elata	17.170
	SRR5643659	five period of Gastrodia elata	2.670
	SRR5643660	five period of Gastrodia elata	2.190
	SRR5643661	five period of Gastrodia elata	3.150
	SRR5643662	five period of Gastrodia elata	2.860
	SRR5643663	five period of Gastrodia elata	3.290
	SRR5643664	five period of Gastrodia elata	8.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.100
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.120
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.740
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.420
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.790
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.320
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.940
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.980
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.230
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.140
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.140
SRP279888	Gastro	Gastrodia elata tuber	2.38
	Juven	Juvenile tuber	0.34
	Mother_Gastro	Mother tuber of Gastrodia elata	5.36
	Mother_Juven	Mother tuber of Juvenile	1.10