Detail information of GWHGAAEX008836/evm.TU.scaffold_23.143


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08001.00E-40FOG: Predicted E3 ubiquitin ligase
nrgi|743773995|ref|XP_010917352.1|4.43E-79PREDICTED: RING-H2 finger protein ATL3 [Elaeis guineensis]
Swissprottr|Q9XF63|ATL3_ARATH3.00E-41RING-H2 finger protein ATL3
trEMBLtr|M0TBP6|M0TBP6_MUSAM9.00E-69Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P31010_001}
TAIRAT1G723101.00E-40RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002537972053798856+
Transcript Sequence

Network for GWHGAAEX008836

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_21021454.60E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms37.720
SRR2545915Juvenile tuber19.940
SRP108465SRR5643513five period of Gastrodia elata28.110
SRR5643514five period of Gastrodia elata15.070
SRR5643515five period of Gastrodia elata41.830
SRR5643524five period of Gastrodia elata11.170
SRR5643525five period of Gastrodia elata90.500
SRR5643528five period of Gastrodia elata108.970
SRR5643658five period of Gastrodia elata63.430
SRR5643659five period of Gastrodia elata36.230
SRR5643660five period of Gastrodia elata10.420
SRR5643661five period of Gastrodia elata16.710
SRR5643662five period of Gastrodia elata50.840
SRR5643663five period of Gastrodia elata26.040
SRR5643664five period of Gastrodia elata134.150
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_171.310
SRR6049655Rhizomagastrodiae_C368-T10_good_145.900
SRR6049656Rhizomagastrodiae_C368-T07_good_135.850
SRR6049657Rhizomagastrodiae_C368-T07_good_166.600
SRR6049658Rhizomagastrodiae_C368-T04_good_187.890
SRR6049659Rhizomagastrodiae_C368-T04_good_1135.010
SRR6049660Rhizomagastrodiae_C368-T01_good_195.390
SRR6049661Rhizomagastrodiae_C368-T04_good_177.070
SRR6049662Rhizomagastrodiae_C368-T01_good_126.590
SRR6049663Rhizomagastrodiae_C368-T01_good_149.700
SRR6049664Rhizomagastrodiae_C368-T10_good_131.930
SRR6049665Rhizomagastrodiae_C368-T10_good_131.930
SRP279888GastroGastrodia elata tuber 20.82
JuvenJuvenile tuber8.74
Mother_GastroMother tuber of Gastrodia elata 131.28
Mother_JuvenMother tuber of Juvenile 66.53