Detail information of GWHGAAEX008838/evm.TU.scaffold_23.145
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|312130346|ref|YP_003997686.1| | 9.00E-51 | pectinesterase [Leadbetterella byssophila DSM 17132] |
| nr | gi|743822670|ref|XP_010932334.1| | 0 | PREDICTED: pectinesterase-like [Elaeis guineensis] |
| Swissprot | tr|Q7Y201|PME13_ARATH | 5.00E-151 | Pectinesterase 13 |
| trEMBL | tr|M0U081|M0U081_MUSAM | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
| TAIR | AT4G33230 | 9.00E-145 | Plant invertase/pectin methylesterase inhibitor superfamily |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 3854583 | 3858201 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008838
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module13 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04043.14 | PMEI | 70 | 218 | 2.60E-25 |
| PF01095.18 | Pectinesterase | 272 | 564 | 3.20E-122 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042545 | Biological Process | cell wall modification |
| GO:0004857 | Molecular Function | enzyme inhibitor activity |
| GO:0030599 | Molecular Function | pectinesterase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.090 |
| SRR2545915 | Juvenile tuber | 0.830 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.000 |
| SRR5643514 | five period of Gastrodia elata | 2.180 | |
| SRR5643515 | five period of Gastrodia elata | 9.890 | |
| SRR5643524 | five period of Gastrodia elata | 1.880 | |
| SRR5643525 | five period of Gastrodia elata | 6.460 | |
| SRR5643528 | five period of Gastrodia elata | 3.050 | |
| SRR5643658 | five period of Gastrodia elata | 2.290 | |
| SRR5643659 | five period of Gastrodia elata | 5.930 | |
| SRR5643660 | five period of Gastrodia elata | 1.260 | |
| SRR5643661 | five period of Gastrodia elata | 4.830 | |
| SRR5643662 | five period of Gastrodia elata | 11.400 | |
| SRR5643663 | five period of Gastrodia elata | 4.700 | |
| SRR5643664 | five period of Gastrodia elata | 29.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.720 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.200 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.340 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.060 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.490 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.170 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.170 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.05 |
| Juven | Juvenile tuber | 0.88 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.30 | |
| Mother_Juven | Mother tuber of Juvenile | 6.90 |