Detail information of GWHGAAEX008851/evm.TU.scaffold_23.159
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3252 | 5.00E-122 | Uncharacterized conserved protein |
| nr | gi|672108045|ref|XP_008783088.1| | 1.04E-137 | PREDICTED: eukaryotic translation initiation factor 3 subunit K [Phoenix dactylifera] |
| Swissprot | tr|Q94HF1|EIF3K_ORYSJ | 1.00E-129 | Eukaryotic translation initiation factor 3 subunit K {ECO:0000255|HAMAP-Rule:MF_03010} |
| trEMBL | tr|W1NZA1|W1NZA1_AMBTC | 1.00E-137 | Eukaryotic translation initiation factor 3 subunit K {ECO:0000256|HAMAP-Rule:MF_03010} |
| TAIR | AT4G33250 | 5.00E-122 | eukaryotic translation initiation factor 3K |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 4192851 | 4218089 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008851
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF10075.8 | CSN8_PSD8_EIF3K | 66 | 190 | 1.40E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006446 | Biological Process | regulation of translational initiation |
| GO:0003743 | Molecular Function | translation initiation factor activity |
| GO:0043022 | Molecular Function | ribosome binding |
| GO:0005737 | Cellular Component | cytoplasm |
| GO:0005852 | Cellular Component | eukaryotic translation initiation factor 3 complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 87.520 |
| SRR2545915 | Juvenile tuber | 105.560 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 71.290 |
| SRR5643514 | five period of Gastrodia elata | 86.650 | |
| SRR5643515 | five period of Gastrodia elata | 80.100 | |
| SRR5643524 | five period of Gastrodia elata | 79.660 | |
| SRR5643525 | five period of Gastrodia elata | 75.160 | |
| SRR5643528 | five period of Gastrodia elata | 95.090 | |
| SRR5643658 | five period of Gastrodia elata | 67.190 | |
| SRR5643659 | five period of Gastrodia elata | 86.240 | |
| SRR5643660 | five period of Gastrodia elata | 83.860 | |
| SRR5643661 | five period of Gastrodia elata | 91.140 | |
| SRR5643662 | five period of Gastrodia elata | 73.620 | |
| SRR5643663 | five period of Gastrodia elata | 69.930 | |
| SRR5643664 | five period of Gastrodia elata | 70.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 65.830 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 104.900 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 72.530 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 58.190 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 53.870 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 45.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 60.080 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 57.050 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 93.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 77.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 98.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 98.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 105.77 |
| Juven | Juvenile tuber | 78.48 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 76.37 | |
| Mother_Juven | Mother tuber of Juvenile | 71.48 |