Gene detail

Detail information of GWHGAAEX008852/evm.TU.scaffold_23.160

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695058451\|ref\|XP_009417542.1\|	3.39E-35	PREDICTED: protein TIFY 10B-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9LMA8\|TI10A_ARATH	6.00E-30	Protein TIFY 10A
trEMBL	tr\|D6MJW7\|D6MJW7_9ASPA	6.00E-38	Transcription factor {ECO:0000313\|EMBL:ADG57814.1} (Fragment)
TAIR	AT1G19180	2.00E-29	jasmonate-zim-domain protein 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	4241674	4249763	-

Transcript Sequence
>GWHTAAEX008852 CACAGTTCCCTTTTTCCGTGATTTCAAAGATAAAGAAAGAACAGAGTATAATGACAGAGAAGGAGGAAACAGGGAGGAAACATCACCGAGACTTTGAATTTTTCGAAAAAAAACTATTAAATATTACATAAACAAGAATAGAAAGAGCTATCGAACCATGCTGAAAACGAAAAAGAACCGCTTTTAATGAGAGGAAAATTTCGGAGAAGAAGACGATGGACGAGAAGCAGAGAGGAGGAACGGGAGAAAAATCCAGCTTTCGAGTGACTTGCACTTTACTTAGCCAATTTCTTAAGACGAACCGAAGCTATGGGGATCTGAATGGAATCGAAAGGCTGTATCAGCAGCAGGGGATGGGAAAATATTCAAACCAGCCGCCAACCACCATGAATCTGTTTCCGGGATCTGATGTATCAGCAGGAACCAAAAATAAATCAAACTCAAAAGAAACAAAGTGCCCAAAGTTTCAAAGGGAGAAAGAAACGGATGCCCCATTGACAATATTTTACGAGGGGAAAGTGATGGTTTTTGAGAATTTTCCGGCTATGAAAGCTAAGAACTTGATGGAAATGGCAAGCAGAGGAAAGGGCATTGCTGTCGCCGGAGCCTCGGCGGCGCCTCCGCAATTACCGCCGGAGACCAGAGCTTCAGTCGATCTTCCTGTGCCCATTGCACGGAGGGCTTCTCTGCATAGATTCCTCGAAAAGAGAAAGGATCGGATAAACAGCAAAACCCCTTATTTAGTCAAGAAAACCTCATTAGATCAGAAGGAGCAAAAATCATCCAAACCAGAGAAAAAGAATGATGCATGGCTTGCATTAGATTTGGGCCATAGCCTAAGTTTCAATTCAAATTAACTGATATTATTATGAATATCTATATTTTAATATTATTGTGAAATAGGATATCATGCATGCATGTTGGCTTCATGTATTTTGGATTGAGCCTTTTAAGTTATTTTATTTTATTTTTTGTTTGTTGAGAATGAGAATTTTAGATAAATTTAGCTTCACTTTCCAATGTGTTATATCTTGAATGTGTACATGCATAAATTCTTCATGCTTTGTTCCAAATTTGTTAGTTAGTTAGTTGTTTATTAATGCGAATAAATGATAGAAAAAACAAAGTTAAAGATGTTAAACTCTTAACGACTTCATCATACAATGCAATACTATACATGAAGTTTTATTTGTGCAACACATGCTTCTATCATTAATAAATTAATGCATAATCATATATTATATGAGAGAGATACTATTAATAAAATAAGCATTTATCTTAAAAAAAATGGATTGATTTATGTGTAGAATAGTGATTTTGGAATATGCTATCATATTAGTTTAAGAAAATAAGAAAGATCAATATAACTTGATACCAATTATTATAATCGTTGGTATCTCTCACTAGCAATTGAATGCTCTTGCAAAGACATCTCTAGCAACATTGTAGCTTACATATATCACAATAAGGAATGATGTTGTGGGGACCGGATACCGGGTTAGCAAGAGCTAATTCAGTAGTATGAGTAATCTCCTAGATGCTGGATCATATTGAGTAATTGAAAAGAAATGATATATACACATAAAACATAATTCATTTATTTTTATGGATTAAAAATTTACAGAGTTTTGATCACAATAATCTAAAAATATTACAAATTTGTAATAACCCCAAAATTTAACCTTCTAAACCAAGCTTAAGTAAGGCCTAACCACAATCCCATTAGACTCAGGACATTATTAAAAGTCTAACGATGAAATCTAAGGTCAAATCGGACAACGGCGAAATCTGGGGTCAAATCGGACAACGGCTGGATATCAAAATATTTTAATATTAAATTAATGCCCGAAACAAAAAAACTAAAATTATTTTCACCACAAATCCAAAATTAATTTGATTTTTTGAATTAATAAATGAATTCGATTTTTCGAATGGCCGGGATCTGTTGTCCCGTTCCGAACACAAGACAACGGATCAACCGAATCTGCATCGATCTCTCAATAGGACCGCGATCTGCAGATTCGTGTCCGATCAAATTCGAGGCGTTGGGTCAGATCCTGGATTTGACGGCAGAGATCGAGCCTGGCCGGCTCGATCCCACTCGGAGAGCCCGCGTTCGCAAAGAACACAGGTAGCTGCCACATCGCCGTCGCTCGTCGTTTTCCAGCAAAGCCACAAGGAAAATGTTTCTTGTTAAGTCCTCTACCAATTGGGCTAGTCCAGAGCCCACGGGGGGCACCTAAGGACCCCTAATTTCCCGGTAAACCCCAGTGGCGTGGTGAACTCCGACGATAGGTATCGCTGTTCCCGTGCTCTTTTCTTCAAATTGATTTTTCGAAATGCTATTTTAGATATTGCTTTATATTTTTGAAACTTGAAATTCCCCAAAACTCGACATTTTTGCTGCCAATTGCGCCACCGGTGAACACTATAATTTCGCTGGAAAAAATTTTCGGCAATCGGTCAAAGGGCTTTTGGTACCCACCGATGCACTGCAGTGAGAGAAGTTCAATGACTGTCAAATCGCGACAAACAAAGGTCAGACGACGCCAGAAAATCTTGCGGAAGGCAAAGCGTCACGGGACAATTCTCCGGGGAAGATGAACTGTAACCGGTCAGGTTACTATAGCTGATAGGTTTGACCGGCTAGTTAACGACTGAATATTCCCTTAACGTTATGAATTTTAAAGGAATCTGTCGACGATCATTAACTGAAACAGAATATTCTTTGGAATATTCCAAATTTAATTAAATTTTATTATTTAAATATCTTGAGCGTTGTAGCGCCTTTTCCTCCGGAAGACTGGCGTTGTGGCACTATGTAGCATCTTTCTCTTTGGAAGTCTGGAGTTTTCGCGCGCTATATCGCCTTTTCTTCTAGAATTGGTGCATTTCTTTCTGGGAGTATGGCGCCCTATGGCGCATTTCCTTCTAGATGTCGAGCGCTAAGGCACGTCGTGGCGCGCTAAAGTGTTTATTTTCATGCAATTTATTTCTTAATTACAATTTAATCTTTTCATGACTGAAATCACATAAAAATATACTAAAGTTTAACTAATCTTAATAAAAACGTAAATTCTAAACAATAAATTCATTATATTTATTCAGTTCAACAACAATATTGCTTACTTGTAGTGTACTTTTCATTTTTATTAGATTATGTGTTATTTATCTTTTTAGAAGTAGTTCTTGTAGATACTTTTTCACACTTAGCATATGTTTGCAATAATCAAATTTAGGTTGCTTTTTTTTTATGCATGTATGTATATCCATGTATATAATTTGCACAGGTTGTGTTGATTTGGAGGTACACTGCTGCATCTATCAAATCTTACTCCTCTTTTATTTCCTGTTTTGTACTTTATTTACACATAGTATTTTCTTTAACTATTGCTACTACTAATTAAATTAATTGTAACAAAATTGTGATACCCTAAAAAAAAATAGATTATGAGTCTCAAATATACTTAGGCAATATGTATAATCAAATTTTTATTTATTTTTACTATGCCCTGACATATGATACTGATATATTATATT

Network for GWHGAAEX008852

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06200.13	tify	90	121	2.00E-14
PF09425.9	CCT_2	151	175	1.30E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Tify

KEGG pathway

KO	Enzyme	pathway	mapID
K13464	JAZ	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.820
SRP064423	SRR2545915	Juvenile tuber	22.420
SRP108465	SRR5643513	five period of Gastrodia elata	27.600
	SRR5643514	five period of Gastrodia elata	56.450
	SRR5643515	five period of Gastrodia elata	86.930
	SRR5643524	five period of Gastrodia elata	88.470
	SRR5643525	five period of Gastrodia elata	31.760
	SRR5643528	five period of Gastrodia elata	141.970
	SRR5643658	five period of Gastrodia elata	24.900
	SRR5643659	five period of Gastrodia elata	47.820
	SRR5643660	five period of Gastrodia elata	39.020
	SRR5643661	five period of Gastrodia elata	45.590
	SRR5643662	five period of Gastrodia elata	28.810
	SRR5643663	five period of Gastrodia elata	15.490
	SRR5643664	five period of Gastrodia elata	10.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.680
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.070
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.830
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.680
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	35.630
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	60.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.300
SRP279888	Gastro	Gastrodia elata tuber	4.83
	Juven	Juvenile tuber	12.14
	Mother_Gastro	Mother tuber of Gastrodia elata	168.65
	Mother_Juven	Mother tuber of Juvenile	100.55