Detail information of GWHGAAEX008853/evm.TU.scaffold_23.161
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383754583|ref|YP_005433486.1| | 5.00E-13 | putative serine/threonine protein kinase with PASTA sensor [Selenomonas ruminantium subsp. lactilytica TAM6421] |
| nr | gi|553726719|dbj|BAO02531.1| | 0 | predicted receptor-like protein kinase ortholog [Nicotiana alata] |
| Swissprot | tr|C0LGR9|Y4312_ARATH | 7.00E-121 | Probable LRR receptor-like serine/threonine-protein kinase At4g31250 (Precursor) |
| trEMBL | tr|M0SVU7|M0SVU7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P05180_001} |
| TAIR | AT3G42880 | 4.00E-158 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 4271636 | 4276626 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008853
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 28 | 70 | 8.50E-09 |
| PF00560.32 | LRR_1 | 122 | 140 | 1 |
| PF07723.12 | LRR_2 | 170 | 183 | 0.94 |
| PF00069.24 | Pkinase | 327 | 529 | 4.40E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-III |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.530 |
| SRR2545915 | Juvenile tuber | 27.850 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.000 |
| SRR5643514 | five period of Gastrodia elata | 27.600 | |
| SRR5643515 | five period of Gastrodia elata | 25.860 | |
| SRR5643524 | five period of Gastrodia elata | 23.460 | |
| SRR5643525 | five period of Gastrodia elata | 14.530 | |
| SRR5643528 | five period of Gastrodia elata | 18.660 | |
| SRR5643658 | five period of Gastrodia elata | 13.890 | |
| SRR5643659 | five period of Gastrodia elata | 39.920 | |
| SRR5643660 | five period of Gastrodia elata | 59.700 | |
| SRR5643661 | five period of Gastrodia elata | 52.060 | |
| SRR5643662 | five period of Gastrodia elata | 29.770 | |
| SRR5643663 | five period of Gastrodia elata | 18.860 | |
| SRR5643664 | five period of Gastrodia elata | 27.820 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.810 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.970 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.900 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.030 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.890 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.750 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.870 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.370 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.590 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.590 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 28.31 |
| Juven | Juvenile tuber | 20.74 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 31.42 | |
| Mother_Juven | Mother tuber of Juvenile | 27.39 |