Gene detail

Detail information of GWHGAAEX008854/evm.TU.scaffold_23.163

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|294054895\|ref\|YP_003548553.1\|	4.00E-18	redoxin domain-containing protein [Coraliomargarita akajimensis DSM 45221]
KOG	KOG2501	0	Thioredoxin, nucleoredoxin and related proteins
nr	gi\|672138202\|ref\|XP_008792848.1\|	0	PREDICTED: LOW QUALITY PROTEIN: probable nucleoredoxin 1 [Phoenix dactylifera]
Swissprot	tr\|O80763\|NRX1_ARATH	0	Probable nucleoredoxin 1
trEMBL	tr\|M0SDE6\|M0SDE6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P10290_001}
trEMBL	tr\|M0SDE6\|M0SDE6_MUSAM	1.00E-10	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P10290_001}
TAIR	AT1G60420	0	DC1 domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	4333568	4337307	+

Transcript Sequence
>GWHTAAEX008854 AAAAAAAAAAAAACGAGTACAAACGAGGAAAAGATGGCCAGAAGCTCTTCGCTGCGAGAAAATGACTCGTCCCGTTGAGATGTAGCCAGAGGGGAGACAAGTGGAGGAGATCGAGAAGAGTAATCATGGCGGATGAAGAAGCAGAGGCTGCTAACAGCTTCGAGGAAGATGAAATCGTCGACGAAGATGACGGCGACGATCTCCGCGACCTAAGATCTCTTCTTACTTCCGAAGATCGTGACTTCCTCGTGCGGAACAACGGAGATATGGTGAAGATCAGCGATCTGGAAGGGAAAACAGTTGGTTTGTATTTCTCCGGATCATGGTGCGGCCCTTGCAGACGATTCACCCCAATTTTGGTTGAGGCATACACAGAGTTAGCTTCGAAATATAAAAATTTTGAGATTGTTTTTGTATCATCAGATGAGGATGATGAAGACTTCGATGATTACTTTTCTGAAATGCCTTGGCTTGCAGTCCCTTTCTCCGATGAAGACAAGCGCGATTCTCTTAGCGAAGAATTTAATGTTGAGGGAATTCCAACCCTGGTTATTATTGATAAGAATGGTGAGGTTCTTACAGATGAGGCTGTTCAGGTGGTTAGGGATTATGGTGCTGAAGGGTATCCATTCACCGACGAGAGGATTACAAAATTGAAAGAGGAAGAGGAGGAGGCCAAGATGAATCAAACTATCAAAAGCTTGTTGGTTACTACTACTAGAGATTTCTTATTCACAAGTAATTTTAAAAAGGTGCCAGTATCGGAACTTGAGGGAAAGATTGTGGGTCTGTACTTCAGTTTGAGCTCATTTGAAGCCTGTGCTGGATTCACACGAAGACTAATAAATGTTTACAATGATTTGAAGGGGAGGGGAGAAAATTTTGAGATTGTGCTGGTTTCCCTTGAAGAAGATGAGACTTCGTTTATGGATGATTTCGAAGATATGCCTTGGTTTGGAATCCCGTTCAAGGATAAGCTATGTGAAAAGCTAGTTCGTTATTTTGAACTGGAGGACCTTCCATCTCTGGTTGTGATTGGGTCCGATGGTAAGACGGTGAATGTAAATGCTGTTGAGCTTGTTGAGGATTATGGGGTTGAGTCATACCCTTTCACCTCTAAGAAGCTGAGAGAGCTCAAGAGGAAGGAGAAGGCTAGGATCGAGAACCAGACTTTGGAGTCCCTTTTCATTTTGGGAGAAAAAGATTTTGTTATTAAAAATGACGGATCTAAGGTTCCTGTTTCGGATCTTGCGGGAATGAACATCCTTCTCTACTTTTCCGCTCACTGGTGCCCCCCTTGCCGGGCCTTTCTCCCCCATCTGATTGAAGTTTACAACAACATCAAAGAAAGAGATGCTGCTTTTGAGATCATTTTCATCTCAAGCGATGAGGATGAAGTGTCCTTTGATGAGTACTTCTTGCAAATGCCATGGCTTGCCCTTCCTTTTTGGGACGAGCGCAAACGCTTCCTCGCCAGAGTCTTCAAGATAAGCGGTATACCATCATGTGTGGCTGTCAGTCCCACTGGCAAAATGGTCACAAAGGAGGCGAGAAGCCTCATAATTGAATATGGAGCTAATGCATACCCTTTTACAAAAGAGAAAATAGTGCAGCTCAAGGCTGAGATGGAGGAGAAAGCCAAGAATTGGCCAGAGAAGATAAGACACAAAGTGCATAGGCATGTGCTGTTGAAGTGTAAGAAAGAATACATCTGTGATAGTTGCGGGAAGAGGGGGAGAGATTGGTCCTTCTATTGCAAGAAGTGCAACTTTGATCTTGACCCTTGCTGTGCCCTGGATGATCACGAGGAGGTGGAGAGTGAGGATGATGATGAGGAGGCTGAGTGGCCTAAAAAGATAAAGCACTTGCTTCACAAGCATCCGCTCGTGAAAGCTTGGAGGCACTACCAGTGTGATTCCTGTGGGGAAGTCAAGCATGGATGGTCGTATTTTTGCGAGGTGTGCGACTTCGACCTCCACCCTGAATGTGCTCTTGGAAATATTGCCACTTTCAAAGAGATTGATGATAGTGGTGATGAGTTTGAGTTTAAAGATGAAGATGAAGTGGAAGAAGAAGAAGATGATACTGATGTTGAAGATTATGGAAAAATTGATGATGAAGCTGAGTCTCTTCAAAGTAGTTTTAAACAAGAGTTGAAATTAAGAAAGCATACTGATGGTGATGATGTGGAAGACAAGGAGAGTAATTTAGAAAATGTTGATGACAACAAATATTATGGTGAGATTGAAGAAGACGAGGGTGAGAGAGAAAATTATGAGGACAATATGGTTGAAGATGAAAGCAAGAAGGAAGAAGAGGAAAGTAAGAAAGAAAGCGACGATGGCGATGTGGTTGAAGATGAAGATGAAGAGGATAAGGAAGGAGATGAAGATAGTAATGAAAACGATGAATATGATGAAGACGATGATGAGGATGGTCCGGGAATGAAAGGCTATGCTTGTAATACAAGAGATAGAGAGAGCTCTGTGTCTTTTCAAGAATCTCTCTTCACTTGTAAGCTATATAAATAACCAGTTTCTGCACTGGAGGCCACGTAAAATCGTATATTACTTAATGCTTTTAGTCATTCTTATTCAAATGTGTTTGCGTAGTTATTATTTTTGTTAGGGTTTAAGATCTTAGCCTATCTGCTGTACTGTGTGTAATTAACTTTTACATTATTGGAATGATGGAACCATATTCTTTAAATTGCGACCTACCAAAAGAATCCTCGTCATCAATGCCTTTTGTTATATCTGCTGAG

Network for GWHGAAEX008854

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13905.5	Thioredoxin_8	56	150	4.90E-31
PF13905.5	Thioredoxin_8	217	309	4.40E-20
PF13905.5	Thioredoxin_8	380	469	4.00E-24
PF03107.15	C1_2	582	622	9.00E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0045454	Biological Process	cell redox homeostasis

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	208.740
SRP064423	SRR2545915	Juvenile tuber	150.560
SRP108465	SRR5643513	five period of Gastrodia elata	159.750
	SRR5643514	five period of Gastrodia elata	114.120
	SRR5643515	five period of Gastrodia elata	142.770
	SRR5643524	five period of Gastrodia elata	138.770
	SRR5643525	five period of Gastrodia elata	152.520
	SRR5643528	five period of Gastrodia elata	160.580
	SRR5643658	five period of Gastrodia elata	153.770
	SRR5643659	five period of Gastrodia elata	139.190
	SRR5643660	five period of Gastrodia elata	123.900
	SRR5643661	five period of Gastrodia elata	118.580
	SRR5643662	five period of Gastrodia elata	100.650
	SRR5643663	five period of Gastrodia elata	109.140
	SRR5643664	five period of Gastrodia elata	96.770
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	123.670
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	111.310
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	122.180
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	136.360
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	106.650
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	125.260
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	125.420
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	133.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	120.970
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	119.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	113.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	113.440
SRP279888	Gastro	Gastrodia elata tuber	89.94
	Juven	Juvenile tuber	123.29
	Mother_Gastro	Mother tuber of Gastrodia elata	225.97
	Mother_Juven	Mother tuber of Juvenile	193.45