Detail information of GWHGAAEX008857/evm.TU.scaffold_23.166
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332982588|ref|YP_004464029.1| | 9.00E-138 | glycoside hydrolase [Mahella australiensis 50-1 BON] |
| nr | gi|694994541|ref|XP_009404942.1| | 0 | PREDICTED: probable beta-D-xylosidase 6 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9LXA8|BXL6_ARATH | 0 | Probable beta-D-xylosidase 6 (Precursor) |
| trEMBL | tr|A0A067GGB2|A0A067GGB2_CITSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDO78723.1} |
| TAIR | AT5G10560 | 0 | Glycosyl hydrolase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 4375267 | 4389709 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008857
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00933.20 | Glyco_hydro_3 | 113 | 384 | 2.00E-30 |
| PF01915.21 | Glyco_hydro_3_C | 427 | 658 | 3.90E-46 |
| PF14310.5 | Fn3-like | 716 | 780 | 5.90E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH3 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 58.190 |
| SRR2545915 | Juvenile tuber | 47.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 50.780 |
| SRR5643514 | five period of Gastrodia elata | 57.640 | |
| SRR5643515 | five period of Gastrodia elata | 52.110 | |
| SRR5643524 | five period of Gastrodia elata | 51.470 | |
| SRR5643525 | five period of Gastrodia elata | 81.250 | |
| SRR5643528 | five period of Gastrodia elata | 121.620 | |
| SRR5643658 | five period of Gastrodia elata | 122.340 | |
| SRR5643659 | five period of Gastrodia elata | 34.000 | |
| SRR5643660 | five period of Gastrodia elata | 46.670 | |
| SRR5643661 | five period of Gastrodia elata | 50.200 | |
| SRR5643662 | five period of Gastrodia elata | 33.390 | |
| SRR5643663 | five period of Gastrodia elata | 44.840 | |
| SRR5643664 | five period of Gastrodia elata | 41.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 149.530 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 71.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 184.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 121.350 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 164.780 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 175.200 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 131.760 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 136.700 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 133.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 118.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 113.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 113.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 48.04 |
| Juven | Juvenile tuber | 31.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 49.97 | |
| Mother_Juven | Mother tuber of Juvenile | 34.61 |