Detail information of GWHGAAEX008862/evm.TU.scaffold_23.173
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0916 | 0 | 1,3-beta-glucan synthase/callose synthase catalytic subunit |
| nr | gi|743880104|ref|XP_010908562.1| | 0 | PREDICTED: callose synthase 3-like [Elaeis guineensis] |
| Swissprot | tr|Q9LXT9|CALS3_ARATH | 0 | Callose synthase 3 |
| trEMBL | tr|A0A022PRA0|A0A022PRA0_ERYGU | 0 | Uncharacterized protein {ECO:0000313|EMBL:EYU17999.1} |
| TAIR | AT1G05570 | 0 | callose synthase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 4506767 | 4558403 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008862
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14288.5 | FKS1_dom1 | 5 | 82 | 1.00E-18 |
| PF02364.14 | Glucan_synthase | 691 | 1408 | 6.50E-244 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT48 |
| Carbohydrate-Active enzymes Family | GT48 |
| Carbohydrate-Active enzymes Family | GT48 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006075 | Biological Process | (1->3)-beta-D-glucan biosynthetic process |
| GO:0003843 | Molecular Function | 1,3-beta-D-glucan synthase activity |
| GO:0000148 | Cellular Component | 1,3-beta-D-glucan synthase complex |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 51.030 |
| SRR2545915 | Juvenile tuber | 66.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 38.800 |
| SRR5643514 | five period of Gastrodia elata | 47.720 | |
| SRR5643515 | five period of Gastrodia elata | 36.810 | |
| SRR5643524 | five period of Gastrodia elata | 42.430 | |
| SRR5643525 | five period of Gastrodia elata | 56.010 | |
| SRR5643528 | five period of Gastrodia elata | 37.370 | |
| SRR5643658 | five period of Gastrodia elata | 52.810 | |
| SRR5643659 | five period of Gastrodia elata | 38.280 | |
| SRR5643660 | five period of Gastrodia elata | 40.790 | |
| SRR5643661 | five period of Gastrodia elata | 34.580 | |
| SRR5643662 | five period of Gastrodia elata | 42.380 | |
| SRR5643663 | five period of Gastrodia elata | 44.610 | |
| SRR5643664 | five period of Gastrodia elata | 46.620 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 48.790 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.230 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 48.650 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 51.990 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 61.090 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 65.570 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 57.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 61.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 47.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 54.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 45.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 45.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 47.09 |
| Juven | Juvenile tuber | 55.74 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.02 | |
| Mother_Juven | Mother tuber of Juvenile | 33.80 |