Gene detail

Detail information of GWHGAAEX008865/evm.TU.scaffold_23.176

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|189502738\|ref\|YP_001958455.1\|	9.00E-08	hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2]
nr	gi\|743779446\|ref\|XP_010920190.1\|	0	PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Elaeis guineensis]
Swissprot	tr\|C6L7U1\|LIN1_LOTJA	0	Putative E3 ubiquitin-protein ligase LIN-1 {ECO:0000250\|UniProtKB:D1FP53}
trEMBL	tr\|A0A061EZ85\|A0A061EZ85_THECC	0	Transducin/WD40 repeat-like superfamily protein {ECO:0000313\|EMBL:EOY07584.1}
TAIR	AT3G06880	9.00E-38	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	4562876	4577102	-

Transcript Sequence
>GWHTAAEX008865 ATGCCCCGAAAGAAGAAGATCCCGGTAGATTCCAAAGAACTCGCCCGATTCCTCAGCTCCACCGTCGGCAGCTTCGTCCAAGACCGATTTCTCGATCGCGATCGACGATTCCGCCACAGGGAAGACTGCGCCGAGCGCCTTGCTTCAGCCAAGCACAAATTCGGATATGCAGATCAGGCCGTCCTCACAAACCTAGATTGGGGCATCGAAGCTCTCGAGGAGGCGATCGTGACGTCCAACCACGAGGCCAAGCTCGCCCGCCTCGACCACGCAGATCGGATGCTCCAGATCTGTGCCATGCTCGATCCCGCCGGATCCACAGCCGGCGTGCCTAACTCCTACCTCTGCGCCTGGGCGCACCTCCATCTCGCATGCCTCTGCCGCCTCCGATCCAACAGCGGAGCCTCGCGCGCCGCGGCCATGCACGCCCTCGATATGTTCGACGTCGATCCGTTCTTCGCCCGAATCGATTTCGCGCCTGAACTCTGGGAAGCCATGTTCCTGCCGCACATGACCTCGATCGTGGGATGGTACTCCGAGGCGCGCCACCGGATCGTCATAGAGGCGATCCCGGACGCGGCAGATCTCTCGATTGCGGCTTCGGATCATCTGTTAAATGAGTCTTTGGTCGCGGCGGTGAGGCCCGATCAGGCGGAGAAGCTTCGCGAGGTGGAGATTGAGTACGGGGAGTCGCTCGATCGAAACACCAGGGTGTACGCCAAGTACTACAAAGAGGTTCTCAGTCAAGAGTCTGCTGATATGCAGGTATCTGCGGGGAAGAAGAACATGCCGGCCTTGCCGCCCATTGCAGAGCCGCCCATGACGCCGCAGCACGAGGTTAGCAGCTCAATTCCCGATTCTGTGAAGTTTGGCCCCATCTTGCCGAAGAGCTCCGGATTTGTCTTTGCGGAGAGAGACGCCGCTGGCAGGGCGGCTTCCGGTCACGATAGGATGCGTTCCACACCAGGTTTTTCACAGGTACATAACAATTTGAATAGGCAAGCCTTGAAGGTGAGCTTGCCTGGGGAGAATGATGAAAATGATTTTGATAGCCCAACTCAAAGACAACTCCCTCTGAAAAATATGAATTCCAAGGCAGACAAGGGAAGCATTACCATGTTCAAATCGCCAAACAAAGATCAGTTTGTTTCAGCCAAAAGCTTCTTAATGGATTCTCCTAAGACTTCCCCTAGAGAATCGTATCCCAAAACACTGAACTACAAGAAATTTACTCCTGGGGACCCCTTTAAGGAAGCTTATCCAAGGATTTTGCCTGTGCAGCAGCTTCCAAAAAAGTCAGAACAAGATGTCATTCCAATCTCAAACCAGTCTTCTTCATTATCTCCATCTTTTGAGAGTACCTCAGGAGAATCAGATGATGATGATGATATGGAGATTAACGATCGCAGCAGAAGCCCTCGAAGCGTGAAGTCTTCAACTAATCAAATCACCTCATCTCCCAGCTTACATTTCGAAGTCGAAGCAGCAAGCCCTAACAGTCCAGCAGAGGAGGAGCTGCAGAGAACAAAATCGCCAAAAGATTTTGTCTGCCCCATCACCGGGCATCTCTTCAATGATCCAGTAACGTTAGAGACAGGCCAAACATATGAGAGGAAAGCAATCCAAGAATGGCTAAAGAGAGGAAACACAACATGCCCCATCACTCGCCAGCCCCTTTCTTCCAGTATCCTGCCCAAAACCAATTACGTATTAAAAAGGCTGATTACAACCTGGATGGAGCAAAATCCCGATATAGCATTAGAGTTCTCATATATGGAAACACCTGAAGCTTCACCTCGTCCCTTCTTCTCCAATGAGTATCATTTCTTAGACCCAAACACCATGGCTGATCTAGACCACCTTCTTTCTGTATCTAGTCCCACTGCTGTAAAGAATGAGAACAAAAGCAATTGGTTTATGAGAGGTCTATCTACTTCTCCAAGAAGCGTAATATCTCAGGCTGCCAGCGAAACATTGATGAATGCCTTGAAGACATATGCCTCGTGTCTCTGTACCTCAGAAGACCTTCAAGAGTGTGAATCCGCTGCCCTGAGAATAGCAAATTTATGGAAGGAATCGAAGGCTAATGCAGCAGTCCAAGCTTTTCTGTCTTCACCAACGATACTGAATGGGTTTCTAGAAATCCTGTCAGCTTCTAACAGCAGGGAAGCTCTCAGAGCATCTGTTTATGTTCTTTCGGAGCTTGTTTCTACAGATGAAAATGTAGCCGAAACTCTTAGTAATGTGGACTCGGATTTCGACTGTCTATCTGCTTTGCTTTTTAACGGTCTGGCCGAGTCAGCCGTTCTTATATACCAGCTACAACCCACATTCTCTCAGCTTTCAGGTCATGATATTGTGCAACCCTTGGTTCAAGTAATAATGAGCAAAGGCGAGCCCACAGATGATTACGGTTGTGCCATGGAGCCAAAGGATGCGGCCATATCATTGTTAGAACAGTTGGTTTCAGGGGGAGATGAGAATTCCCACTTGATCAATGCCTTGAGTGTGATTTCGGCAAATGGGCTTCCTGCTCTTATCAAGTGTCTGAGTCAGATGGAAGGAAGGGCTTCTGTCGTATCAATACTTATAAGTTGTATGCATGCCGACAAAACATGCAGAAATTTGATCGCAAAGACGGATGAGTTGGTCTTTGTTCTTGAGCTATTTCATGCCGGGAATGATAACACTAAGAACATATGCATTGATTTTTTCTCCGAAATTGTTTCTATGAAAAGGAGAACCACCAGTAATCAGGTGTTACAGAAAATTAAAGACGGAGGCTCATTTAGCACTATGCATTCCTTTTTAGTTTACCTTCAAATGGCTCCACCCGAGCAGCAGCCTCTGGTTGCTAGTCTTCTCCTCCAGCTTGATCTTCTGGTAGAACCTCGAAAGGCCAGCATTTACAGGGATGAAGCTATTGATTCGATAATTGAAGCTCTTAAACAAAAAGACTTTCCTCTCTGCCAAATCATTGCTCTAGACACCTTATTTTCTGTAACTGGGCGGCTAAACGCCATTGGAGAGCCTGTCACTGAGGCATGGCTGCTGAAGATTGCTGGGGTTAATCGGATTAATGCCATCTTGGAGGATGAAGAATTCAGCGGAAATTTCATAGATGTCGGGGATGCAAATTCGGAAGAGGAAGCAAAAGCTATGAGTATTTGGGAGAAACGAGTCGCATTTGTGTTGTGTAATCATGAGAACGGTGCAATTTTTAAAGCTCTGGAGGAATGCCTAACGAGCAAATTCATGGAAATGACCAAGATGTGCCTCGTGATTGCCACGTGGCTGATATACATCCTCAACAATCTTCCTGACACTGGTATGAGAGCGATCGCAAGCCAAAGCTTGCTGGATCACTTGGTGGATACCCTCGAGTCATCTAAAAACACGGAGGAGAAAATCCTTGCTGCGTTAGCTTTAAAAAGCTTATTTAGTGATCCAGATTTGGAAAGAGGGCTTGTGGCACATGCCAAGCGAATTTACACGCCTTTGAGGAAGCTTAAAAGGCATTCATCACTGGCTGCTGAGATGGTGAAAGAAATAATGAATTCGCCTTCTGTTGACACGTCGGAGTGTTGGTCTTGTGCTGAATTATTTGAGATAGACTCTAGTTCTAATGGTGAGGTGCTGTGCCTTGTTCACTCAAAAGGGCGGCTTTTTAGCAGCCACTCTGATGGAACTATTAAGATGTGGGATGTTGGGAAGAGGGGTTGGCACTTGATTCAAGAAGTTCAAGAACACATGAAGGCGGTTACTGGCCTTCATATATCTCAACCAAGTGATAGATTATACAGTTGTTCACTTGACAAGACCATCCGAGTCTGGAAAACAGAACCAGAGATACAAAGTCTTCAGGTTTTTGAAATGAAAGAACAAGTTCATTGCTTGGCTGCTAATGCCAGCGTCGTATGCTTCACATCTCAAGGAACAAGCGCCAAGATCTCTAAATGGACTGGCGTTCCAAAACAAGTCAATCTCAACAAAAATGTGAGATGCCTTGCGATGACAGATGAAGTTCTCTACTGTGGCTGCACCGGCTACTGCATCCAGGAAGTGGATCTGAAGAGGCACACATCGAATCTTTTTTATGTAGGGACAAGGAAATTGCTGGGCAAACAAACCATACATGCTCTCTGCATTCGCGATGGTATTCTCTATGCCTGCGGGTCGTCTGTCGATGGAGTTGCTGGGAAGGCATTTTCTTTGGCTACGAGAACTGCGGTAGGGTCATTAGCGACATTCTTGGATGTCCATAGCATTACTGTGAACGATGATTTTGTTTTCATGGGCGCAAAGAGCGGGTTCATTGAAATCTGGAACAAGGAAAGTCTGACCAGAATTTGCTCCCTTAAAGCCGGAGCCACAGCAAACACGAGGCTCACATCTCTGGCATCGGATTCCGAGGGGGAGATGCTGTTCTCGGGCTCGTCAGACGGAAAGATCCAGGTTTGGGCACTTGAATGA

Network for GWHGAAEX008865

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04564.14	U-box	512	582	1.60E-15
PF00400.31	WD40	1244	1279	0.0031
PF00400.31	WD40	1463	1487	0.23

Protein Sequence

>GWHPAAEX008865
MPRKKKIPVDSKELARFLSSTVGSFVQDRFLDRDRRFRHREDCAERLASAKHKFGYADQAVLTNLDWGIEALEEAIVTSNHEAKLARLDHADRMLQICAMLDPAGSTAGVPNSYLCAWAHLHLACLCRLRSNSGASRAAAMHALDMFDVDPFFARIDFAPELWEAMFLPHMTSIVGWYSEARHRIVIEAIPDAADLSIAASDHLLNESLVAAVRPDQAEKLREVEIEYGESLDRNTRVYAKYYKEVLSQESADMQVSAGKKNMPALPPIAEPPMTPQHEVSSSIPDSVKFGPILPKSSGFVFAERDAAGRAASGHDRMRSTPGFSQVHNNLNRQALKVSLPGENDENDFDSPTQRQLPLKNMNSKADKGSITMFKSPNKDQFVSAKSFLMDSPKTSPRESYPKTLNYKKFTPGDPFKEAYPRILPVQQLPKKSEQDVIPISNQSSSLSPSFESTSGESDDDDDMEINDRSRSPRSVKSSTNQITSSPSLHFEVEAASPNSPAEEELQRTKSPKDFVCPITGHLFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLSSSILPKTNYVLKRLITTWMEQNPDIALEFSYMETPEASPRPFFSNEYHFLDPNTMADLDHLLSVSSPTAVKNENKSNWFMRGLSTSPRSVISQAASETLMNALKTYASCLCTSEDLQECESAALRIANLWKESKANAAVQAFLSSPTILNGFLEILSASNSREALRASVYVLSELVSTDENVAETLSNVDSDFDCLSALLFNGLAESAVLIYQLQPTFSQLSGHDIVQPLVQVIMSKGEPTDDYGCAMEPKDAAISLLEQLVSGGDENSHLINALSVISANGLPALIKCLSQMEGRASVVSILISCMHADKTCRNLIAKTDELVFVLELFHAGNDNTKNICIDFFSEIVSMKRRTTSNQVLQKIKDGGSFSTMHSFLVYLQMAPPEQQPLVASLLLQLDLLVEPRKASIYRDEAIDSIIEALKQKDFPLCQIIALDTLFSVTGRLNAIGEPVTEAWLLKIAGVNRINAILEDEEFSGNFIDVGDANSEEEAKAMSIWEKRVAFVLCNHENGAIFKALEECLTSKFMEMTKMCLVIATWLIYILNNLPDTGMRAIASQSLLDHLVDTLESSKNTEEKILAALALKSLFSDPDLERGLVAHAKRIYTPLRKLKRHSSLAAEMVKEIMNSPSVDTSECWSCAELFEIDSSSNGEVLCLVHSKGRLFSSHSDGTIKMWDVGKRGWHLIQEVQEHMKAVTGLHISQPSDRLYSCSLDKTIRVWKTEPEIQSLQVFEMKEQVHCLAANASVVCFTSQGTSAKISKWTGVPKQVNLNKNVRCLAMTDEVLYCGCTGYCIQEVDLKRHTSNLFYVGTRKLLGKQTIHALCIRDGILYACGSSVDGVAGKAFSLATRTAVGSLATFLDVHSITVNDDFVFMGAKSGFIEIWNKESLTRICSLKAGATANTRLTSLASDSEGEMLFSGSSDGKIQVWALE

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016567	Biological Process	protein ubiquitination
GO:0004842	Molecular Function	ubiquitin-protein transferase activity
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.700
SRP064423	SRR2545915	Juvenile tuber	1.220
SRP108465	SRR5643513	five period of Gastrodia elata	12.120
	SRR5643514	five period of Gastrodia elata	15.720
	SRR5643515	five period of Gastrodia elata	15.520
	SRR5643524	five period of Gastrodia elata	17.400
	SRR5643525	five period of Gastrodia elata	6.010
	SRR5643528	five period of Gastrodia elata	17.570
	SRR5643658	five period of Gastrodia elata	10.590
	SRR5643659	five period of Gastrodia elata	1.700
	SRR5643660	five period of Gastrodia elata	2.820
	SRR5643661	five period of Gastrodia elata	2.450
	SRR5643662	five period of Gastrodia elata	2.570
	SRR5643663	five period of Gastrodia elata	1.990
	SRR5643664	five period of Gastrodia elata	1.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.180
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.140
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.950
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.390
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.870
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.060
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.630
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.380
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.010
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.060
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.060
SRP279888	Gastro	Gastrodia elata tuber	4.85
	Juven	Juvenile tuber	8.29
	Mother_Gastro	Mother tuber of Gastrodia elata	33.88
	Mother_Juven	Mother tuber of Juvenile	36.70