Detail information of GWHGAAEX008869/evm.TU.scaffold_23.180
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|197284318|ref|YP_002150190.1| | 2.00E-20 | cold shock protein CspE [Proteus mirabilis HI4320] |
| KOG | KOG3070 | 3.00E-35 | Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing |
| nr | gi|593129220|ref|XP_007131692.1| | 1.37E-46 | hypothetical protein PHAVU_011G033900g [Phaseolus vulgaris] |
| Swissprot | tr|O65639|CSP1_ARATH | 1.00E-35 | Cold shock protein 1 |
| trEMBL | tr|V7AHY2|V7AHY2_PHAVU | 5.00E-47 | Uncharacterized protein {ECO:0000313|EMBL:ESW03686.1} |
| TAIR | AT4G36020 | 3.00E-35 | cold shock domain protein 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 4616904 | 4617542 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008869
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00313.21 | CSD | 8 | 73 | 2.00E-27 |
| PF00098.22 | zf-CCHC | 137 | 151 | 3.70E-07 |
| PF00098.22 | zf-CCHC | 193 | 209 | 1.30E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | CSD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 226.160 |
| SRR2545915 | Juvenile tuber | 246.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 510.050 |
| SRR5643514 | five period of Gastrodia elata | 417.720 | |
| SRR5643515 | five period of Gastrodia elata | 463.600 | |
| SRR5643524 | five period of Gastrodia elata | 509.770 | |
| SRR5643525 | five period of Gastrodia elata | 141.280 | |
| SRR5643528 | five period of Gastrodia elata | 292.580 | |
| SRR5643658 | five period of Gastrodia elata | 126.040 | |
| SRR5643659 | five period of Gastrodia elata | 789.010 | |
| SRR5643660 | five period of Gastrodia elata | 869.130 | |
| SRR5643661 | five period of Gastrodia elata | 1005.610 | |
| SRR5643662 | five period of Gastrodia elata | 833.900 | |
| SRR5643663 | five period of Gastrodia elata | 670.000 | |
| SRR5643664 | five period of Gastrodia elata | 843.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 352.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 228.370 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 405.280 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 321.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 470.380 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 464.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 449.120 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 427.570 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 387.580 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 514.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 273.560 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 273.560 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 608.69 |
| Juven | Juvenile tuber | 228.69 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 180.66 | |
| Mother_Juven | Mother tuber of Juvenile | 173.71 |