Gene detail

Detail information of GWHGAAEX008871/evm.TU.scaffold_23.183

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1980	Uncharacterized conserved protein
nr	gi\|743803295\|ref\|XP_010926880.1\|	PREDICTED: pre-rRNA-processing protein TSR1 homolog [Elaeis guineensis]
trEMBL	tr\|A0A068UGH7\|A0A068UGH7_COFCA	Coffea canephora
TAIR	AT1G42440	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	4684195	4720339	+

Transcript Sequence
>GWHTAAEX008871 TTCAGATCAAAGTATTTTAATTTTATTTTACAAATATAAATTTTTAGTGATTATTATCTAATTATAAAATAAAGAAAAATGTAAACCCTAAATAATAGTGCGTTCATCGGCCAAAAGCCCGCCGACACCCTCTTTCTATTGAGCCAAACAGCTTTTAATCCTACCTTCTACTGTTCCGTTCATTGGCAATAACACGCCATGGGAGGTTCTCGCGTTCAAGTGAACAAGGCTCATAAGACCCGTTTCTCTTCCAAATCCTCAAGGAAGGCGCACAGGGTTCCTGCCACAGATAAAAGCAGAATCGCTAAAGCAGATAAGAATGCCATGAAGGGCGCCCGTGCTGCGCGGATCCAGCGCTGCAAGATGTTACGCGATCAGAAGAGAGCTACGTTATTGAAGGAGAAAAGGTCTCTAAGTGGACCATCTAGCCCTCCACGTGTTATTGTTCTTTGTGGACTATCTGCATCTGTGAATCTGGATATACTGGCTAAGGACCTTCGTATTTTACTATCTGGAGAAGAATCAGGTGCCATTTCAGCAACAGTTGCTTCTCAAACTTATAAACTTAGAACAACGGTTTTGATGGCTCCATATGGTGACTTGGTATCATGCATAGAGCTGGCAAAGGTTGCAGATTTAATTGCTTTTGTAGTATCGGCCAACTCCTTGGATGATTGTTGTGAAAGCCTCATTGATTCATTTGGAACTCAGTGTCTTTCTGTTTTCAGGGCTATTGGTTTTCCCAGCACCACAGTCCTGATTCGGGATATTCCTGTTGGCTTGAGGGAGAAGCAGGATGTGAAGAAGTGTGCCATTTCTTGTCTTGGTTCCAAGCTGCCTAAGGATTGCCGATTTTATCCAGCGGACACAAAGGAAGAATTGCACAAGTTCATGTGGCTTTACAAAGAGCAACACCTTTCTGCTCCACATTGGCGAAGCCAACAGTCTTACATTTTGTCACAGGAGGTTGCTCTTGAGCTTGACAATAATAGGCCTGGTATATGTACTCTACTTCTTTCAGGCTATGTGAGAGCTCGCAATATTTCAGTGAACCAGCTTGTTCATGTTTCAGGTGCAGGGGATTTTCAATTAGATAAGATTGATGTACTCCGGGATCCAATGCCTTTGAATGAAAGAAAGAGTTTTACTTCAATGGACTCAGCTAATTACGGTTTTGCTGAGGTTGTTCTCACAATAAAGCCTGATGCCTCAAAGCAGGAACCCCTAGTTGTTGAGAACATACCAGACCCCCTTGCTGGGGAACAGACTTGGCCAACAGAAGCTGATATGGAGGAAGCTGATGAAAACAATAGAAAACGAAAATTACAAAGGAGGAAACTACCTCCGGGAACCTCAAATTATCAGGCTGCATGGATAGTTGATAATTCAGATGATGATGCTTCTGATGGTGATGTGGCTGAAGATGACGGTATGGTGTTGGATGGGCAAAGAGATACTTTTGCACCATTAGGATCCAGTCAATCAGACAATGAAAATGAAATTTATATCGAAGGTTTTGACGAAAAAACTGAGGCGGATTCTGAAATGGCTGATGATGCAAATATGACAAGAGAACAGATAGAGGCAGAGATTAAAAAACTTAAAGATGCGAGTGGTTTGGATGAAGAGTTTCCAGATGAAGTGGACACTCCATTAGATATTCCAGCTAGAAAGCGTTTTGCAAAGTACAGAGGGCTTAAGTCTTTTAGAACATCTTCGTGGGATCCTCAGGAATCTTTACCACCGGAATATGCAAGAATATTCAATTTTGATAATTTTACCAAAACCCAAAATCATGTCCTCACTAAAGCCCAAAAAATTGATAATGAACATGTTGATGGTTCTGTGCAAGTTGGATCATATGTCAGGCTCCATGTAAAGGATGTGCCAGTTGATTTAGCATCTAAAGTGCATCGCTTTTCCCAAAGGGTTTTGATTGTAGCTTGTGGCCTTCTACAGCATGAGACTAAAATGTCTGTTCTTCACTTCAGCATAAAGAAGCATGATTCGTATGGCGCTCCTATAAAATCCAAGGAGACTTTTACTTTTCATGTTGGATTTCGCCAATTTGTTGCTCGACCCATTTTTTCAACTGATAATATCAACTCAGATAAGCACAAACTGGAGAGGTTTTTACTTCCAGGTCGTTTTTCAGTTGCCTCCATTTATGCTCCCATCTGTTTCACTCCCATGCCCTTAGTTGCCTTGAAGAACAGACTCGGAGATGCACCAACAGTTGCTGCTGTGGGTTCGTTAAGAACTGTTGACCCTTACAGGATAATACTAAAGAAAATTGTTTTGACTGGTTACCCCTTAAGGGTTTCAAAGAAGAAAGCTACTGTGCGATACATGTTTCATAACCCTGATGATGTCAGATGGTTTAAGCCAATTGAGTTGTACTCCAAATGTGGCCGCCGAGGCTTGATAAAGGATTCGGTTGGGACTCATGGCGCTATGAAATGCATGTTCAATGGTGTTATTCAGCAGCATGATACTGTCTGCATGAGCTTGTTCAAGCGTGCATACCCAAAATGGCCTGAGCAAATCTTCCCATTACAGTGAAGCATACATCTTATTGCCTCTCAGCAATTTTGATATATATATGTGTGTATGTATCTCATATCAAATGAATCAGAATCTTGGAAAAACTTGTTTACATGCTTCCTGCTCTTTTAGTGTTTATTATGTTATGGTTCTTATAATGTCTTGTTTTGTGGTTTTGTTATTGAATTTTATTTTTATAATAGATATATTCTTTTATTATATTTTAAATTTTTGTTACTGTGGGC

Network for GWHGAAEX008871

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08142.11	AARP2CN	227	307	2.40E-17
PF04950.11	RIBIOP_C	482	777	1.70E-114

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0042254	Biological Process	ribosome biogenesis
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.330
SRP064423	SRR2545915	Juvenile tuber	48.290
SRP108465	SRR5643513	five period of Gastrodia elata	31.810
	SRR5643514	five period of Gastrodia elata	29.640
	SRR5643515	five period of Gastrodia elata	27.480
	SRR5643524	five period of Gastrodia elata	28.610
	SRR5643525	five period of Gastrodia elata	15.140
	SRR5643528	five period of Gastrodia elata	15.150
	SRR5643658	five period of Gastrodia elata	13.700
	SRR5643659	five period of Gastrodia elata	31.980
	SRR5643660	five period of Gastrodia elata	34.380
	SRR5643661	five period of Gastrodia elata	33.200
	SRR5643662	five period of Gastrodia elata	30.630
	SRR5643663	five period of Gastrodia elata	34.660
	SRR5643664	five period of Gastrodia elata	31.350
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	34.770
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	37.200
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	36.920
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.750
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	41.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.480
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	40.900
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	39.100
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	42.110
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	43.510
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	36.730
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	36.730
SRP279888	Gastro	Gastrodia elata tuber	50.83
	Juven	Juvenile tuber	63.27
	Mother_Gastro	Mother tuber of Gastrodia elata	27.62
	Mother_Juven	Mother tuber of Juvenile	52.47