Gene detail

Detail information of GWHGAAEX008878/evm.TU.scaffold_23.190

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|296132950\|ref\|YP_003640197.1\|	2.00E-86	DEAD/DEAH box helicase [Thermincola potens JR]
KOG	KOG0326	0	ATP-dependent RNA helicase
nr	gi\|719998572\|ref\|XP_010255444.1\|	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like [Nelumbo nucifera]
Swissprot	tr\|Q6H7S2\|RH8_ORYSJ	0	DEAD-box ATP-dependent RNA helicase 8
trEMBL	tr\|M0RU50\|M0RU50_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P21200_001}
TAIR	AT4G00660	0	RNAhelicase-like 8

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	4880423	4910242	+

Transcript Sequence
>GWHTAAEX008878 GCAGATGGCCAAACACAAGAAATCTAGAGTATCTTCCTCTCCTTCTAGCTCTCGCCGGAAAATGAGGAGAAATGCCTCACTCTAGCTCGCTCGCCCCCATTATTCGATAATTTGGTCCGAGCATCGCTCATCTTCCCGCTTATTCTGCACGCACTAGTCTGGAAGTTCTTTTAGTAGGCGCGGAAGCTTCTGAGCTCCGCTCTGATCCCTCCGTAGTTGAGGATTTGCATAAAAATCTGACCTATATTTATTCTGATCCAAGAATCATTTCTTTTTCTGCTCTGTTACGCGCATTTCGCTCGGATGAACCCTAGAGGGAGGTATCCTCCCGGAATTGGTAATGGCCGCGGGGGCAGTGCGGGTCCTAATCCTCCTAATTTCTATCCAAGAGGACCTCAACTACAGCAGCAATACATGCAAAGAAATATCTCATCTGATCAGCAGAATCAGCACATTCAGCAGCAGCAGCAGCAGCAGCGGCAACAATGGCTAAGGAGGAATCTGATGAATCAGGTGGAAGTCAATTCCGGTGCAATGGCGAAAATGGTATCTTCTGATGTAAAGGATTCAAGTTCTCAAGATTGGAAAGCACAGTTGAAAATACCACCTTCTGACACACGCTACAAGACAGAGGATGTTACCGCCACTAAAGGAAATGATTTTGAAGATTATTTTCTTAAGAGGGAGCTGCTAATGGGCATATATGAGAAGGGATTTGAAAAACCTTCACCTATTCAAGAAGAAAGCATCCCAATTGCTCTAACTGGAAGTGACATTCTTGCTAGAGCTAAGAATGGGACCGGAAAAACTGCTGCCTTCTGCATTCCGGCACTAGAAAAAATTGATCAAGACAAAAATACTATACAAGTCGTTATATTGGTCCCTACAAGGGAATTGGCTCTTCAAACATCTCAGGTTTGTAAGGAGCTTGGGAAGCATTTGAAGATTCAGGTAATGGTAACTACTGGAGGAACCAGCTTGAAAGATGATATCATGCGCTTGTATCAACCAGTCCACTTACTTGTTGGAACACCTGGCCGAATCCTAGATCTTGCTAAGAAAGGCATCTGCATTTTGAGGAATTGTGCCATGCTCATTATGGATGAGGCAGACAAGCTTCTGTCTTCTGAATTTCAACCTTCAATTGAACAGCTAATTCGTTATCTTCCTGCAAGTAGACAAATACTGTTGTTTTCGGCCACTTTTCCTGTGACTGTTAAGGATTTCAAGGACAGATATCTTCCAAAACCCTACGTAATCAACCTGATGGATGAACTGACCCTCAAAGGAATAACACAATTTTATGCATTTGTAGAAGAAAGGCAGAAAGTCCACTGCCTAAATACTCTCTTCTCAAAGCTGCAAATCAACCAATCTATTATATTTTGTAATTCTGTCAACCGGGTAGAACTATTGGCAAAGAAAATCACTGAACTTGGCTATTCATGCTTTTACATTCATGCTAAAATGCTGCAAGATCATAGAAATCGTGTTTTCCATGACTTCCGCAATGGTGCATGCAGAAATCTTGTCTGCACAGATCTATTCACAAGGGGCATTGACATCCAGGCTGTCAATGTTGTAATCAACTTTGATTTTCCCAAAAATTCAGAAACTTATCTTCATCGGGTTGGTCGCTCTGGAAGGTTTGGTCATCTCGGCTTAGCAGTCAATTTGATCACTTATGAGGACCGCTTTAACCTTTACAGGATCGAGCAAGAGCTTGGCACTGAAATAAAGCAGATTCCTCCTCAAATAGATCAAGCCATTTATTGCAGTTGATCTGTGATAAGTTCTGCATCTTCAAATGAATAACGAAACATAAGATTCCATTGTAAATTCCTGCTACATCTTGGTCTTAATTATGCCCTTATATGCTGCACATGAGGAGGAAGAGTTTTGGGAGATTTATGAATGTGTTTCTCTGGATTATTGATAGTTTCTTCTTGTCAGAGAATGACAGGGCTCTGTATGACTGGCTGAAAATATTCTATGGATTTGAAAATAGTAAAACTTTAGAGTGATATTCTGTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTT

Network for GWHGAAEX008878

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	143	307	2.80E-45
PF00271.30	Helicase_C	344	450	6.70E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12614	DDX6, RCK, DHH1	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	25.040
SRP064423	SRR2545915	Juvenile tuber	32.990
SRP108465	SRR5643513	five period of Gastrodia elata	16.660
	SRR5643514	five period of Gastrodia elata	18.820
	SRR5643515	five period of Gastrodia elata	14.900
	SRR5643524	five period of Gastrodia elata	17.920
	SRR5643525	five period of Gastrodia elata	8.240
	SRR5643528	five period of Gastrodia elata	9.050
	SRR5643658	five period of Gastrodia elata	7.510
	SRR5643659	five period of Gastrodia elata	24.170
	SRR5643660	five period of Gastrodia elata	24.260
	SRR5643661	five period of Gastrodia elata	22.410
	SRR5643662	five period of Gastrodia elata	16.700
	SRR5643663	five period of Gastrodia elata	19.040
	SRR5643664	five period of Gastrodia elata	19.180
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.780
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.650
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.580
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.570
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	16.630
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.300
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.870
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.970
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	28.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	29.870
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	29.870
SRP279888	Gastro	Gastrodia elata tuber	32.44
	Juven	Juvenile tuber	31.10
	Mother_Gastro	Mother tuber of Gastrodia elata	10.75
	Mother_Juven	Mother tuber of Juvenile	19.64