Detail information of GWHGAAEX008893/evm.TU.scaffold_23.204
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|350535226|ref|NP_001234695.1| | 3.73E-60 | ethylene responsive element binding protein [Solanum lycopersicum] |
| Swissprot | tr|Q8LDC8|ERF92_ARATH | 2.00E-56 | Ethylene-responsive transcription factor 1B |
| trEMBL | tr|Q8GZE9|Q8GZE9_SOLLC | 1.00E-60 | Ethylene responsive element binding protein {ECO:0000313|EMBL:AAN77067.1} |
| TAIR | AT3G23240 | 7.00E-56 | ethylene response factor 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 5168389 | 5169480 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008893
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 81 | 131 | 8.10E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-ERF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14516 | ERF1 | MAPK signaling pathway - plant | map04016 |
| Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.560 |
| SRR2545915 | Juvenile tuber | 13.270 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 33.580 |
| SRR5643514 | five period of Gastrodia elata | 23.820 | |
| SRR5643515 | five period of Gastrodia elata | 98.960 | |
| SRR5643524 | five period of Gastrodia elata | 69.610 | |
| SRR5643525 | five period of Gastrodia elata | 19.480 | |
| SRR5643528 | five period of Gastrodia elata | 157.070 | |
| SRR5643658 | five period of Gastrodia elata | 22.370 | |
| SRR5643659 | five period of Gastrodia elata | 110.000 | |
| SRR5643660 | five period of Gastrodia elata | 109.270 | |
| SRR5643661 | five period of Gastrodia elata | 82.980 | |
| SRR5643662 | five period of Gastrodia elata | 94.610 | |
| SRR5643663 | five period of Gastrodia elata | 62.760 | |
| SRR5643664 | five period of Gastrodia elata | 66.510 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.070 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.500 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.550 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 32.630 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 34.410 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.420 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.270 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.870 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.870 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 61.47 |
| Juven | Juvenile tuber | 114.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 179.15 | |
| Mother_Juven | Mother tuber of Juvenile | 138.99 |