Gene detail

Detail information of GWHGAAEX008900/evm.TU.scaffold_23.212

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|37520287\|ref\|NP_923664.1\|	2.00E-37	two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421]
KOG	KOG0519	0	Sensory transduction histidine kinase
nr	gi\|743825740\|ref\|XP_010933099.1\|	0	PREDICTED: protein EIN4-like [Elaeis guineensis]
Swissprot	tr\|Q9ZTP3\|EIN4_ARATH	0	Protein EIN4
trEMBL	tr\|M0RNP4\|M0RNP4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P02140_001}
TAIR	AT3G04580	0	Signal transduction histidine kinase, hybrid-type, ethylene sensor

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	5325256	5350697	-

Transcript Sequence
>GWHTAAEX008900 ACTTTTTTCTTACATTCATTGTATTTCTCCTATAAACCTCTTCTCGTACCCTCGGCTTGTTCGCTCTCCCTCTCCTGTCGCTGCTTGCTGGATCAAAGATCGAAAAGACCAGACTTTTCCTCCCCCAATTCATCCATTTGAACGTAGAAATGGAATGTCAGTGAAAGGGCGCCGAACTGAGGCACACTTCCTAGGTTTTCTTGATTCAAACTTGACTAGGAAAGAGCGACCCCGCTTTCCTGCGGCTTCTGGGTATCATTGCTCGGATACTTTTTCAATTAAAATGAGATCAAGCAAAAGGTTAGGGAACATCGAAGAAGTCCTCAGCATCCGCACGCGCTTCTCTGCTGGACTAGGGAAAAAGTGGGTTCACGGGTAGGGGTGTTTTCATTTCCCCCGCTGGATCTTATGATGTGGTCGATCTGGATTTTGGTTATGCGATCGTTTAGTCTTCTTGAAGCTCTTATGCCCACGAGTTTGTTAATTTCGGGATTACTTGTGTCTTTTGCCTGTTCTCAGATCTGAGGATTCGGCTTTTGGGCATTTTATTGCGTATGCCAGGCCGATATCGATCACTTGGGCTCATGAAGGCGGCTTAAAGAGCAGGAATTAGCTAGGATCTTGCAGGAGTCCAAGTGATTTTGGATGCTTTATAATTCTTTTATATAAATGGATTGAATGAATTTTCTTCTGATCAAATGTTGAGAGCGCTGTGCCATGGCTTGCTGTTTATGTTATTAATGATTTCTGCATCGGCCATTGAGGCTGGATATCCTCGCTGCAATTGTGATATTGACGGCTTCTTCAGTGCTGAAGCCATCCTTCAATGCCAGAAAGTCAGCGACTTCTTGATTGCAGCTGCATACTTCTCCATACCTCTTGAGCTCTTATATTTCGCAACGTGCTCCGATTTATTCCCCTTCAAATGGATCGTTTTTCAATTTGGGGCCTTCATAGTCCTTTGCGGACTAACTCATTTACTCAATGTGTTTACATACGAACCTCACTCATTTATCTTGATGTTGAGCCTCACGATATCTAAGCTCTTCACTGCACTGGTCTCCTTTGCGACTACGATCACTCTTCTAACTTTGATCCCTCAGCTTTTGAGAGTGAAAGTGAGGGAGAATTTTCTGAGAATAAAAGCTAGGGAATTGGACAGGGAGGTTGGAATGATGAAGAGGCAGGAGGAAGCAAGTTGGCATGTGAGAATGCTAACACAGGAGATTCGGAAGTCCCTTGATCGGCATACTATCCTTTACACAACTTTGGTTGAACTTTCAAAAACCCTTGGGCTGCAGAATTGTGCAGTATGGATGCCGGATGAATGCAATAAGATGATGAATTTGACTCATGAGTTGAGACAAAGGCGCTCAATGGAATTGTATGAGCAAATTCCCATTAATGATCGGGATGTAGTAGAAGTGCATGGGTTAAAGGGTGTAAAGATACTTAGACCGGATTCTTTACTTGCTTTGGTGAGTAATGGGGGAGATCCCGAGCCTGGATCTATTGCAGCAATTAGGATGCCAATGCTGAAGGTGTCCAATTTCAAGGGCGGGACACCAGAGCTAGTTCAAGCCTCTTATGCTATATTGGTTCTGGTTCTACCCAGCGAAGATTCTAGGATTTGGAGTCATCATGAGCTCGAAATTATTGAAGTAATTGCTGATCAAGTTGCTGTTGCTCTTTCTCATGCCGCTGTATTAGAGGAGTCACAGTTAATGAGGGAGAAACTTGCAGAGCAGAATCGGACATTGCTGCAAGAAAAGAAGAATGCTCTGATGGCAAGTGAAGCAAGAAATTCTTTCCAAAAGGTAATGAGCCAGGGAATGAGAAGGCCAATACACTCAATTTTGGGCTTGTTATCCATGATGCAGCGAGAAAAAATGAGTTCCGAACAACGGCTTATCATAAACACTATAACAAAAACCAGTGGTGTTGTTTCGACCTTGATAACAGATGCAATGGAAATATCTAATATCAACGGTGAGAGATTGACACTAGAGATGAGATCATTTCATTTGCATTCTATGATCAAGGAGGCTGCCAGTGTTGCTAGGTGTCTTTGTGATTGCAGAGGATTTGGTTTTGGGGTTCAGGTTGATAATGCTGTGCCTGATAGAGTTGTTGGTGATGAGAAGAGAATATTCCATGCTATACTTCATGTGATTGATAAACTGTTAAGTGCATATGGCGAAGGCTTTGTTAGTTTTCAAGTTCATAATTGCTGTAGTGAGTCACAAGGTAATCACGATCAGGAATGGATTGCATGGAAATCAAACTTTCCTGGTGTTTCTGTAAAGTTTGAAATTGGGATCAAAACTCCAGAATGTAGTGACTCTAATTTATCTGTTCCGCGAGCTTGGAGACTCAATGTTGAGAGCTATGACATGGGCCTCAGTTTCAATATGTGTAAAGAACTTGTGCAGATGATGCATGGGGATATCTGGGTTGTACCTAATTTCCAAGGTTACCCCGAAAGCATAAAACTAGTTCTCCAGTTTCAGCAGCAGCCCCTCAGCCCAGTCTCCGAACTGAGCGAGTCCTTGGGGAAACCGCATCACAGCTCCTCTTTGCCAAACTTCAAGGGCCTCAGGGTCCTACTGGCTGACGATGATGACGTCAACAGAGCCGTAACGCGAAAACTCCTTGAGAAACTTGGCTGCAAGGTCACGTCAGTCTCTTCTGGGGCCCAATGCCTTGGCTCTCTCAGTGCATCTGGCACGCCCTACCAGCTTGTTATTCTAGATCTCCACATGCCTCTACTGAACGGGTTTGAGGTGGCTACGAGGATCCGGAAGCTGAGGAGTCGATCTTGGCCCGCCATCGTGGCTGTAACCGCAAGCGCTGAGGAGCAAATGTGGCAGAGATGCCTCCAGGCCGGAATGAATGGTCTGATCCGGAAACCAGTCATGCTCCAAGCCATCGGGGATGAACTCTATAGAGTTCTTCACAATACTTAGGAGAAAGAAGATGAGCATGAACGGGTTTTGGAATGAAGTCGGAACTTCGATGTCGATTTCAATCAAATTGTGGATTGCCATCCGACTGCCGGTTTTTTCTGCCTGGTGTTGATGAAGAAAATTGAGATTAAAAAAATGCACTTTTTTATGTTAAAATATATTTATTGATTCATAATTATTCAGAACTAACAGTATTGATGTTGACAGGGTGCTGTATTTCCAAACTCTTGAATTATATAGTCAGTCTTGCCAAAAGTTATTGATAGCAGTGGTATTTACAAACCAGAATATCTTTCTATTTACAAATCAGCACTAAAACAAACCTGTGCTTGGATGTAATCATAGTGCAGATTTTTGTGCCATTTTTGCTTGCCCAAGGGACTTGTTTTTTGAGGGAGTTGATCTCCCTAATATATTGCCTAATATCCTCATGAATGATATTAATGTGTTTAATCTTGGTTAATGTATCTGTTGTATGGTCTACTTATAAAAACATAAGCTGAGGTTGGTTTTCATGAAAAAAGAACTTGCTGGGCAATCTATTTTAAGGTAATGTAATCTCAGTGCAACCGACTTTAGATGTTCTTAAAACTGCAGTCTCCAAAGGATTTCAAAGGGTCACTTGGAGTTGGTGCAAACTGCCAAAAGCTATTACTTCACTAAAATTCGTACCTTCTATGTTTGCTTTGTTTTTACTATTCTATCATTGTGAGTTTGTTTTTCATATTTTTTTAAAATTTTCTAATGTCAAGTTCTCTTTGATGTCTATCCAGAAATTCTTTGTTGGCTCCCTACAACATTAGTTTGATAGATTTTCATCATATCCTCACCAAACTCTTGAGTGATGATTATGCACAGCTTTTATTGAGAGGATTCTACTTGATCCTAAAATTTCAGAAGAAGATCTTCAAATAGACACCTTTTGATTTCATGAGTGAACTTCTTATTGCTCATGTTTGGGTAAACTTCCCATTACTCAAGGCACATTTGATCAATCATGGCCACTCAAAGTGGATTTTGCAACTACAAACCTACTTAGGTTGTCCATTGCGTGGGATGTAGAAATTGATCTTATCGAGCATTTTGA

Network for GWHGAAEX008900

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01590.25	GAF	182	331	2.70E-13
PF00072.23	Response_reg	635	744	7.00E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
K14509	ETR, ERS	MAPK signaling pathway - plant	map04016
K14509	ETR, ERS	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0009723	Biological Process	response to ethylene
GO:0007165	Biological Process	signal transduction
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0000155	Molecular Function	phosphorelay sensor kinase activity
GO:0004672	Molecular Function	protein kinase activity
GO:0005515	Molecular Function	protein binding
GO:0051740	Molecular Function	ethylene binding
GO:0038199	Molecular Function	ethylene receptor activity
GO:0005789	Cellular Component	endoplasmic reticulum membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	23.270
SRP064423	SRR2545915	Juvenile tuber	29.970
SRP108465	SRR5643513	five period of Gastrodia elata	26.740
	SRR5643514	five period of Gastrodia elata	32.560
	SRR5643515	five period of Gastrodia elata	33.980
	SRR5643524	five period of Gastrodia elata	28.980
	SRR5643525	five period of Gastrodia elata	32.170
	SRR5643528	five period of Gastrodia elata	34.260
	SRR5643658	five period of Gastrodia elata	41.110
	SRR5643659	five period of Gastrodia elata	39.600
	SRR5643660	five period of Gastrodia elata	39.590
	SRR5643661	five period of Gastrodia elata	35.700
	SRR5643662	five period of Gastrodia elata	42.180
	SRR5643663	five period of Gastrodia elata	41.480
	SRR5643664	five period of Gastrodia elata	37.820
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.160
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.430
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.150
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.190
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.010
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.050
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.130
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.880
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.510
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.510
SRP279888	Gastro	Gastrodia elata tuber	35.87
	Juven	Juvenile tuber	44.76
	Mother_Gastro	Mother tuber of Gastrodia elata	30.31
	Mother_Juven	Mother tuber of Juvenile	44.13