Detail information of GWHGAAEX008905/evm.TU.scaffold_23.217
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|158336397|ref|YP_001517571.1| | 7.00E-25 | WD repeat-containing protein [Acaryochloris marina MBIC11017] |
| KOG | KOG0268 | 3.00E-153 | Sof1-like rRNA processing protein (contains WD40 repeats) |
| nr | gi|672162301|ref|XP_008800979.1| | 0 | PREDICTED: DDB1- and CUL4-associated factor 13 [Phoenix dactylifera] |
| Swissprot | tr|Q3Y8L7|DAW1_CHLRE | 5.00E-14 | Dynein assembly factor with WDR repeat domains 1 |
| trEMBL | tr|I1NLP9|I1NLP9_ORYGL | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA01G0078900.1} |
| TAIR | HS10092627 | 3.00E-153 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 5432573 | 5452959 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008905
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 62 | 95 | 0.00097 |
| PF00400.31 | WD40 | 105 | 137 | 2.60E-06 |
| PF00400.31 | WD40 | 282 | 317 | 8.50E-05 |
| PF00400.31 | WD40 | 331 | 360 | 0.00085 |
| PF04158.13 | Sof1 | 361 | 447 | 1.20E-31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 64.580 |
| SRR2545915 | Juvenile tuber | 65.490 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 56.650 |
| SRR5643514 | five period of Gastrodia elata | 62.600 | |
| SRR5643515 | five period of Gastrodia elata | 53.570 | |
| SRR5643524 | five period of Gastrodia elata | 59.170 | |
| SRR5643525 | five period of Gastrodia elata | 59.760 | |
| SRR5643528 | five period of Gastrodia elata | 56.370 | |
| SRR5643658 | five period of Gastrodia elata | 64.870 | |
| SRR5643659 | five period of Gastrodia elata | 56.570 | |
| SRR5643660 | five period of Gastrodia elata | 59.850 | |
| SRR5643661 | five period of Gastrodia elata | 51.870 | |
| SRR5643662 | five period of Gastrodia elata | 54.970 | |
| SRR5643663 | five period of Gastrodia elata | 57.020 | |
| SRR5643664 | five period of Gastrodia elata | 63.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 40.450 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 36.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 42.310 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 42.310 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 36.320 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 33.960 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 36.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 33.730 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 38.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 33.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 50.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 50.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 80.40 |
| Juven | Juvenile tuber | 61.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 72.23 | |
| Mother_Juven | Mother tuber of Juvenile | 69.78 |