Detail information of GWHGAAEX008907/evm.TU.scaffold_23.219


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|163854545|ref|YP_001628843.1|5.00E-25hypothetical protein Bpet0241 [Bordetella petrii DSM 12804]
nrgi|694995740|ref|XP_009390186.1|0PREDICTED: probable pectate lyase 5 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9SCP2|PLY12_ARATH0Probable pectate lyase 12 (Precursor)
trEMBLtr|I1I4F1|I1I4F1_BRADI0Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIRAT3G531900Pectin lyase-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002554914685501082+
Transcript Sequence

Network for GWHGAAEX008907

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00544.18Pec_lyase_C1423201.30E-22
Protein Sequence

Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyPL1

KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.780
SRR2545915Juvenile tuber2.200
SRP108465SRR5643513five period of Gastrodia elata8.540
SRR5643514five period of Gastrodia elata7.190
SRR5643515five period of Gastrodia elata7.080
SRR5643524five period of Gastrodia elata6.240
SRR5643525five period of Gastrodia elata4.360
SRR5643528five period of Gastrodia elata4.090
SRR5643658five period of Gastrodia elata2.360
SRR5643659five period of Gastrodia elata14.980
SRR5643660five period of Gastrodia elata11.150
SRR5643661five period of Gastrodia elata13.880
SRR5643662five period of Gastrodia elata15.370
SRR5643663five period of Gastrodia elata20.570
SRR5643664five period of Gastrodia elata14.840
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.750
SRR6049655Rhizomagastrodiae_C368-T10_good_18.890
SRR6049656Rhizomagastrodiae_C368-T07_good_111.810
SRR6049657Rhizomagastrodiae_C368-T07_good_18.760
SRR6049658Rhizomagastrodiae_C368-T04_good_16.790
SRR6049659Rhizomagastrodiae_C368-T04_good_13.970
SRR6049660Rhizomagastrodiae_C368-T01_good_111.190
SRR6049661Rhizomagastrodiae_C368-T04_good_19.350
SRR6049662Rhizomagastrodiae_C368-T01_good_118.780
SRR6049663Rhizomagastrodiae_C368-T01_good_113.490
SRR6049664Rhizomagastrodiae_C368-T10_good_113.360
SRR6049665Rhizomagastrodiae_C368-T10_good_113.360
SRP279888GastroGastrodia elata tuber 8.38
JuvenJuvenile tuber11.79
Mother_GastroMother tuber of Gastrodia elata 2.30
Mother_JuvenMother tuber of Juvenile 11.14