Detail information of GWHGAAEX008910/evm.TU.scaffold_23.223
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|325106903|ref|YP_004267971.1| | 1.00E-13 | TGF-beta receptor type I/II extracellular region [Planctomyces brasiliensis DSM 5305] |
| KOG | KOG1237 | 6.00E-95 | H+/oligopeptide symporter |
| nr | gi|590593776|ref|XP_007017666.1| | 5.66E-139 | Peptide transporter 5 [Theobroma cacao] |
| Swissprot | tr|Q9M390|PTR1_ARATH | 2.00E-95 | Protein NRT1/ PTR FAMILY 8.1 |
| trEMBL | tr|A0A061FCV7|A0A061FCV7_THECC | 2.00E-139 | Peptide transporter 5 {ECO:0000313|EMBL:EOY14891.1} |
| TAIR | AT3G54140 | 6.00E-95 | peptide transporter 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 5508216 | 5509481 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008910
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00854.20 | PTR2 | 18 | 260 | 6.00E-63 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.750 |
| SRR2545915 | Juvenile tuber | 1.730 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.000 |
| SRR5643514 | five period of Gastrodia elata | 0.770 | |
| SRR5643515 | five period of Gastrodia elata | 0.070 | |
| SRR5643524 | five period of Gastrodia elata | 0.610 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.150 | |
| SRR5643658 | five period of Gastrodia elata | 0.060 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.070 | |
| SRR5643662 | five period of Gastrodia elata | 0.070 | |
| SRR5643663 | five period of Gastrodia elata | 0.050 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.320 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.370 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.160 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.150 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.370 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.050 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.750 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.540 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.67 | |
| Mother_Juven | Mother tuber of Juvenile | 0.03 |