Detail information of GWHGAAEX008913/evm.TU.scaffold_23.226
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|194334117|ref|YP_002015977.1| | 8.00E-08 | major facilitator superfamily protein [Prosthecochloris aestuarii DSM 271] |
| KOG | KOG2325 | 0 | Predicted transporter/transmembrane protein |
| nr | gi|743876735|ref|XP_010907654.1| | 0 | PREDICTED: SPX domain-containing membrane protein Os06g0129400-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q658H5|SPXM3_ORYSJ | 0 | SPX domain-containing membrane protein Os06g0129400 |
| trEMBL | tr|M0S145|M0S145_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P18870_001} |
| TAIR | AT4G11810_2 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 5519506 | 5571844 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008913
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03105.18 | SPX | 108 | 145 | 4.70E-08 |
| PF07690.15 | MFS_1 | 254 | 627 | 1.30E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0005887 | Cellular Component | integral component of plasma membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 45.990 |
| SRR2545915 | Juvenile tuber | 37.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.630 |
| SRR5643514 | five period of Gastrodia elata | 19.880 | |
| SRR5643515 | five period of Gastrodia elata | 20.070 | |
| SRR5643524 | five period of Gastrodia elata | 21.710 | |
| SRR5643525 | five period of Gastrodia elata | 37.020 | |
| SRR5643528 | five period of Gastrodia elata | 53.860 | |
| SRR5643658 | five period of Gastrodia elata | 53.060 | |
| SRR5643659 | five period of Gastrodia elata | 10.860 | |
| SRR5643660 | five period of Gastrodia elata | 12.750 | |
| SRR5643661 | five period of Gastrodia elata | 9.990 | |
| SRR5643662 | five period of Gastrodia elata | 13.320 | |
| SRR5643663 | five period of Gastrodia elata | 13.460 | |
| SRR5643664 | five period of Gastrodia elata | 16.380 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 22.030 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.460 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.430 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 30.690 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 36.430 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 45.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 31.940 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 34.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.100 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.100 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.57 |
| Juven | Juvenile tuber | 10.57 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 54.13 | |
| Mother_Juven | Mother tuber of Juvenile | 41.78 |