Detail information of GWHGAAEX008914/evm.TU.scaffold_23.227
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|374995433|ref|YP_004970932.1| | 2.00E-81 | theronine dehydrogenase-like Zn-dependent dehydrogenase [Desulfosporosinus orientis DSM 765] |
| KOG | KOG0024 | 0 | Sorbitol dehydrogenase |
| nr | gi|695023163|ref|XP_009398735.1| | 0 | PREDICTED: sorbitol dehydrogenase-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FJ95|DHSO_ARATH | 0 | Sorbitol dehydrogenase |
| trEMBL | tr|M0SQC7|M0SQC7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P19640_001} |
| TAIR | AT5G51970 | 0 | GroES-like zinc-binding alcohol dehydrogenase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 5574554 | 5605657 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008914
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08240.11 | ADH_N | 34 | 145 | 4.20E-32 |
| PF00107.25 | ADH_zinc_N | 185 | 305 | 2.50E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00008 | SORD, gutB | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 | ||
| Fructose and mannose metabolism | map00051 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 80.940 |
| SRR2545915 | Juvenile tuber | 86.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 89.600 |
| SRR5643514 | five period of Gastrodia elata | 122.890 | |
| SRR5643515 | five period of Gastrodia elata | 80.330 | |
| SRR5643524 | five period of Gastrodia elata | 105.370 | |
| SRR5643525 | five period of Gastrodia elata | 126.540 | |
| SRR5643528 | five period of Gastrodia elata | 79.630 | |
| SRR5643658 | five period of Gastrodia elata | 119.260 | |
| SRR5643659 | five period of Gastrodia elata | 51.150 | |
| SRR5643660 | five period of Gastrodia elata | 63.520 | |
| SRR5643661 | five period of Gastrodia elata | 53.750 | |
| SRR5643662 | five period of Gastrodia elata | 51.760 | |
| SRR5643663 | five period of Gastrodia elata | 60.380 | |
| SRR5643664 | five period of Gastrodia elata | 61.910 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 106.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 72.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 122.670 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 106.960 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 115.990 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 130.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 125.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 114.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 113.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 117.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 124.880 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 124.880 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 75.83 |
| Juven | Juvenile tuber | 97.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 37.90 | |
| Mother_Juven | Mother tuber of Juvenile | 62.97 |