Detail information of GWHGAAEX008915/evm.TU.scaffold_23.228
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|134097525|ref|YP_001103186.1| | 5.00E-79 | zinc-binding dehydrogenase [Saccharopolyspora erythraea NRRL 2338] |
| KOG | KOG0024 | 2.00E-180 | Sorbitol dehydrogenase |
| nr | gi|695023163|ref|XP_009398735.1| | 0 | PREDICTED: sorbitol dehydrogenase-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FJ95|DHSO_ARATH | 0 | Sorbitol dehydrogenase |
| trEMBL | tr|M0SQC7|M0SQC7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P19640_001} |
| TAIR | AT5G51970 | 2.00E-180 | GroES-like zinc-binding alcohol dehydrogenase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 5609054 | 5618571 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008915
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08240.11 | ADH_N | 1 | 108 | 4.40E-27 |
| PF00107.25 | ADH_zinc_N | 148 | 278 | 3.20E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00008 | SORD, gutB | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 | ||
| Fructose and mannose metabolism | map00051 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 73.740 |
| SRR2545915 | Juvenile tuber | 28.210 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 71.270 |
| SRR5643514 | five period of Gastrodia elata | 66.120 | |
| SRR5643515 | five period of Gastrodia elata | 38.320 | |
| SRR5643524 | five period of Gastrodia elata | 36.580 | |
| SRR5643525 | five period of Gastrodia elata | 11.250 | |
| SRR5643528 | five period of Gastrodia elata | 3.260 | |
| SRR5643658 | five period of Gastrodia elata | 5.150 | |
| SRR5643659 | five period of Gastrodia elata | 39.280 | |
| SRR5643660 | five period of Gastrodia elata | 45.570 | |
| SRR5643661 | five period of Gastrodia elata | 25.820 | |
| SRR5643662 | five period of Gastrodia elata | 38.800 | |
| SRR5643663 | five period of Gastrodia elata | 65.300 | |
| SRR5643664 | five period of Gastrodia elata | 49.460 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 58.510 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 53.460 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 61.160 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 45.540 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 42.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 46.150 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 48.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 35.790 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 47.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 64.250 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 78.300 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 78.300 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.29 |
| Juven | Juvenile tuber | 44.96 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.98 | |
| Mother_Juven | Mother tuber of Juvenile | 6.77 |