Gene detail

Detail information of GWHGAAEX008921/evm.TU.scaffold_23.235

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672161967\|ref\|XP_008800814.1\|	2.36E-154	PREDICTED: scarecrow-like protein 28 [Phoenix dactylifera]
Swissprot	tr\|Q9CAN3\|SCL28_ARATH	1.00E-136	Scarecrow-like protein 28
trEMBL	tr\|A0A067F839\|A0A067F839_CITSI	8.00E-152	Uncharacterized protein {ECO:0000313\|EMBL:KDO63554.1}
TAIR	AT1G63100	3.00E-136	GRAS family transcription factor

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	5676334	5678565	-

Transcript Sequence
>GWHTAAEX008921 AAAGTACGTATCATCCGGACCTTTGCGGCATTTTTTCCATGGAAAGAACGGAGGAGGAGCTGAGGCACAAGGAATGATAGAGCTGCTGAGGAAGAATAACAGATAAAACCTCTACTTCTCCCTTCCCGTTTCTAGATTTTTTTTTTCTGTTTTTTGTAGATAAAGAAGACATTTTGATCGAGCTTCGGAGGCTTTCAAATTGATAAAAAAGCTCATTTTTTGTTATTTGCTTACTCCTTTTTTTCTTCTCCCTCTATGTTCATAGGAGCTCAGAATCGCTGCAAAGGAAATGATTTGCATCGGTGGTAGGCGAGATTAACGGTGCAGAGTATGGTTCAAGAGATTGGTCCTCTGTTTTTTTCATTGAGATGAGTGCAAGAATGGAGTGAGACCGCTGTGAACCTTATTGGGGCTTCCACGGACTGCGAAGCACCCCAAATGTTTCAATCTCAACAGTCAATGCATCAAAGCTCTTGCTCTAAATTTCCAAGGAGTCTGTCAAAATTGAAGTTTTTAATGCCGAGAATGAGTCTTACAATGGTTCCCCCAAGAAGAAATCATGGCGCGAGATTATTGGGTTGAACAGACAGAGAGAAAACAACCAAACGGAGGACCAAAGCCTTGAGCTTGTTAGAATCCTCACATTTTGTGTGGAAGCAATCAGTTCAGGCGATCATGGTGCTACAAATTACCTTCTTGCTAAACTAGGAGAAATGGGCTCTCCAACAGGAAGCACGGTTCATCGGCTAGCGGCTTATTTCACTGAAGGTCTAGCCTTATCTGCTGCAAAGCTCTGGCCTCATCTATTTTCAATCAACCCGCCGCGAGATGTCATAGAACTGGCCGACGACGACGAAGCCGAGGCTCTTCGGCTTCTTGACCAAGCCACTCCAATGCCCAAATTCATCCATTTCACACTCAATGAGAGACTGATGAGGGTATTCCAAGGGAAGGATAGAGTGCACATCATTGATTTGGACATCAAGCAAGGATTGCAATGGCCGAGTTTGTTCCAGAGCTTAGCATCATCGCCCAATCCACCTAAACATGTGAGAATCACAGGGATTGGAGAATCAAAGCATGAGCTGCAGAGCACAGGAGCGCGGCTTGCCGGGCTTGCGGATTCCTTGAATCTTCCTTTCCAGTTTCACGCAGTTGTGGATCAACTAGAGGATGTCAGGCTTTGGATGCTTCATGTGAAGGAAGGAGAATGTTTGGCTGTGAATTGTGTGCTTCAGCTGCACAAGACACTCTATGACGACACCGGAGGATCTCTGAGGGATCTAATGCGGGTGATTCGGAGCACGAACCCCGCACTAGTCCTCGTCGCTGAAGAAGAGGCTGATCACAATCATCATCAACTAGAGATGAGATACGCAAACTCTCTAAGGTATTACGCCGCTGTCTTCGATGCCTTGAATGTCAGTCTGCCTGAGGAGAGCCCAGAGAGAGCCAAGATTGAGAAGATGTTTGCTTGGAAGATTAGGAATGTCATCGCAAGGGAAGGGACTGAATGCCGGCACGAGAATTTCCGAAGCTGGAGCAGGAAATTGAAGGACTGCGGGTTCGAAAATGTCGGCATTGGAGATATGGAGAAGATTAAGAGCCAGGTGATATTGAGGATGTATTCAGATTCTGGCTGTTACTCTGTGGAGAGGAAGGAAGAAGATGGGGAGAAGGAGGCTCTTTGTTTGAAGTGGCAAGACCACCCGCTTTACACACTTTCAGCCTGGGCTCCCATTGATGTTTCTGCAGCAACTCAGCAAGATTGATTCATTGATTGGAAGGCATTTCTCCGTTTTGATCTAGTTTGAATTCTTTCTCAAGCCAGAATTTCTTTACCTGGAAGAACGTTGAGGAGAGTACACCTCTTTCTTCCTGTCAATACTATACTAAAAACTAGTACGACTTTCATTCTTTGAGGATCACTTGAAAGAGGCAATGAAAGGCTCTGGAATAAGATTAAAATATTATTCTTTGATTAATTTGTTAAGAGAAACATACGACTCATTTGATGATGTTAATACAGATGTCATTTTCTTACAGTAAAGTTTTCGTGGTTATTCAACATCTTTGCGCTGTTTCTCCTGTTTCTGTTCTCTGAATGCTATATATCTCTCTCTGTAAGGCTAAACATTTGATGAAAG

Network for GWHGAAEX008921

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03514.13	GRAS	3	340	1.10E-107

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.460
SRP064423	SRR2545915	Juvenile tuber	3.950
SRP108465	SRR5643513	five period of Gastrodia elata	2.730
	SRR5643514	five period of Gastrodia elata	5.050
	SRR5643515	five period of Gastrodia elata	4.310
	SRR5643524	five period of Gastrodia elata	7.320
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.000
	SRR5643658	five period of Gastrodia elata	0.080
	SRR5643659	five period of Gastrodia elata	0.090
	SRR5643660	five period of Gastrodia elata	0.130
	SRR5643661	five period of Gastrodia elata	0.100
	SRR5643662	five period of Gastrodia elata	0.290
	SRR5643663	five period of Gastrodia elata	0.150
	SRR5643664	five period of Gastrodia elata	0.390
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.540
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.120
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.700
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.160
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.540
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.060
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.350
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.350
SRP279888	Gastro	Gastrodia elata tuber	0.40
	Juven	Juvenile tuber	0.46
	Mother_Gastro	Mother tuber of Gastrodia elata	0.28
	Mother_Juven	Mother tuber of Juvenile	0.22