Detail information of GWHGAAEX008929/evm.TU.scaffold_23.242


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|433609836|ref|YP_007042205.1|3.00E-30putative 4-coumarate-CoA ligase 3 [Saccharothrix espanaensis DSM 44229]
KOGKOG11768.00E-73Acyl-CoA synthetase
nrgi|743776461|ref|XP_010918638.1|1.54E-91PREDICTED: 4-coumarate--CoA ligase-like 1 isoform X2 [Elaeis guineensis]
Swissprottr|Q9M0X9|4CLL7_ARATH2.00E-734-coumarate--CoA ligase-like 7
trEMBLtr|W9SXG6|W9SXG6_9ROSA3.00E-784-coumarate--CoA ligase-like 7 {ECO:0000313|EMBL:EXC31783.1}
TAIRAT4G051608.00E-73AMP-dependent synthetase and ligase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002558012615802118+
Transcript Sequence

Network for GWHGAAEX008929

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00501.27AMP-binding382632.90E-43
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K019044CL Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ubiquinone and other terpenoid-quinone biosynthesismap00130
Phenylpropanoid biosynthesismap00940

Gene Ontology

GO term OntologyName
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.110
SRR2545915Juvenile tuber14.970
SRP108465SRR5643513five period of Gastrodia elata6.600
SRR5643514five period of Gastrodia elata10.020
SRR5643515five period of Gastrodia elata6.490
SRR5643524five period of Gastrodia elata8.450
SRR5643525five period of Gastrodia elata8.520
SRR5643528five period of Gastrodia elata7.680
SRR5643658five period of Gastrodia elata6.720
SRR5643659five period of Gastrodia elata8.060
SRR5643660five period of Gastrodia elata8.490
SRR5643661five period of Gastrodia elata7.400
SRR5643662five period of Gastrodia elata7.450
SRR5643663five period of Gastrodia elata8.240
SRR5643664five period of Gastrodia elata5.160
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_129.570
SRR6049655Rhizomagastrodiae_C368-T10_good_142.060
SRR6049656Rhizomagastrodiae_C368-T07_good_135.700
SRR6049657Rhizomagastrodiae_C368-T07_good_136.620
SRR6049658Rhizomagastrodiae_C368-T04_good_154.480
SRR6049659Rhizomagastrodiae_C368-T04_good_138.120
SRR6049660Rhizomagastrodiae_C368-T01_good_141.720
SRR6049661Rhizomagastrodiae_C368-T04_good_168.180
SRR6049662Rhizomagastrodiae_C368-T01_good_141.970
SRR6049663Rhizomagastrodiae_C368-T01_good_130.940
SRR6049664Rhizomagastrodiae_C368-T10_good_115.250
SRR6049665Rhizomagastrodiae_C368-T10_good_115.250
SRP279888GastroGastrodia elata tuber 12.11
JuvenJuvenile tuber20.32
Mother_GastroMother tuber of Gastrodia elata 16.30
Mother_JuvenMother tuber of Juvenile 22.04