Detail information of GWHGAAEX008932/evm.TU.scaffold_23.245


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|110637750|ref|YP_677957.1|0glycogen branching protein [Cytophaga hutchinsonii ATCC 33406]
KOGKOG047001,4-alpha-glucan branching enzyme/starch branching enzyme II
nrgi|672116393|ref|XP_008781359.1|0PREDICTED: 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic-like [Phoenix dactylifera]
Swissprottr|Q01401|GLGB_ORYSJ01,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic (Precursor)
trEMBLtr|A0A068BBJ6|A0A068BBJ6_COCNU01,4-alpha-glucan-branching enzyme {ECO:0000313|EMBL:AIC82459.1}
TAIRAT5G036500starch branching enzyme 2.2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002558206185873960-
Transcript Sequence

Network for GWHGAAEX008932

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02922.17CBM_481322154.90E-20
PF00128.23Alpha-amylase3033842.00E-10
PF02806.17Alpha-amylase_C6697662.00E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00700GBE1, glgB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500

Gene Ontology

GO term OntologyName
GO:0005975Biological Processcarbohydrate metabolic process
GO:0005978Biological Processglycogen biosynthetic process
GO:0003844Molecular Function1,4-alpha-glucan branching enzyme activity
GO:0003824Molecular Functioncatalytic activity
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0043169Molecular Functioncation binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms133.770
SRR2545915Juvenile tuber262.550
SRP108465SRR5643513five period of Gastrodia elata94.080
SRR5643514five period of Gastrodia elata87.290
SRR5643515five period of Gastrodia elata93.190
SRR5643524five period of Gastrodia elata88.240
SRR5643525five period of Gastrodia elata30.520
SRR5643528five period of Gastrodia elata26.360
SRR5643658five period of Gastrodia elata31.050
SRR5643659five period of Gastrodia elata146.810
SRR5643660five period of Gastrodia elata141.340
SRR5643661five period of Gastrodia elata128.860
SRR5643662five period of Gastrodia elata202.500
SRR5643663five period of Gastrodia elata205.880
SRR5643664five period of Gastrodia elata198.420
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1144.640
SRR6049655Rhizomagastrodiae_C368-T10_good_157.010
SRR6049656Rhizomagastrodiae_C368-T07_good_1127.630
SRR6049657Rhizomagastrodiae_C368-T07_good_1101.810
SRR6049658Rhizomagastrodiae_C368-T04_good_166.930
SRR6049659Rhizomagastrodiae_C368-T04_good_151.740
SRR6049660Rhizomagastrodiae_C368-T01_good_154.760
SRR6049661Rhizomagastrodiae_C368-T04_good_186.640
SRR6049662Rhizomagastrodiae_C368-T01_good_170.300
SRR6049663Rhizomagastrodiae_C368-T01_good_143.380
SRR6049664Rhizomagastrodiae_C368-T10_good_171.180
SRR6049665Rhizomagastrodiae_C368-T10_good_171.180
SRP279888GastroGastrodia elata tuber 124.88
JuvenJuvenile tuber55.30
Mother_GastroMother tuber of Gastrodia elata 28.08
Mother_JuvenMother tuber of Juvenile 35.90