Gene detail

Detail information of GWHGAAEX008933/evm.TU.scaffold_23.246

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2817	2.00E-134	Predicted E3 ubiquitin ligase
nr	gi\|672125530\|ref\|XP_008786185.1\|	0	PREDICTED: protein RMD5 homolog A-like [Phoenix dactylifera]
trEMBL	tr\|M0RWN5\|M0RWN5_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P03270_001}
TAIR	AT4G37880	2.00E-134	LisH/CRA/RING-U-box domains-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	5901165	5918473	-

Transcript Sequence
>GWHTAAEX008933 AAAAAAAGCCGGCAGACAATTATCGAGCTCTTCTCTGGAGTTTGATGACCTTCTGGTCCTTGCCCTAGATTCTTCATCCCGATCGAGACGACGCACGGCTTCAGCTCACAAATCGCATCGCAGAGGCAGAGCCGCAGACGAAGGCCACGGCACCGAAAGCTGCTCTTCATCTTTCGCTCTGATCCCCGATCTAGAGTCCTTTTCCCTTTCAGTTCACCCTGTGTCGTTGCGTAGATCGCTCGTTCGACGCTTTTAGTGGCATATTGGTGATATTTATCCGCTCAGTTCCAAAAACTTAGCTGTAATTAAGACGCTCAATCCCACTCTGCTCCTCCAAGAACCACATGAACTGAGGATCTTACAACTCCTAATTCGGAAGCAGAACAATTTGGGCAGTTATACTGAAGACAGATCTGGGATTAACAAACAAAGAATTAAGCATGGCTTAAAAGCTTTTATAGCTATTTATAATTTTATTTGAACCTTTTTATATATACCATGTTTGGTATTCAAGTTGGGATTTTCTATAATTCATTAAAAGGGCACTTATACTGTAAGACAGTTGGGATTTAGTTGACAGAATTAAACATGGCTACAGCTGGCATATTATTAGAATGGAGCTAAGCAGTCTCAGAGACACATTCGATAGAGTTGCCAAGAAGCAAAAGCTCTCCTCGACTCAAAGGCTGGAATTGATAGAGCAGCTCGGAAATGAAATAGAAAGCGCGGCAACAAAGATTCAATCCGATCCAGCGAACTCCTCTTCCATTAATATTCTGCGGGAGCTGAGCAGGAAGCTGAACGAGCTGTCCCCACAGAGTCTCCTTGAAGGCTCCCAGAAAGAGCTGAGCTTCCTGGTAGGCAAATATGCCAAAGCTCTCGAGAAGAATTTCAATCCCGACATCTCCAGGGCCTTCGGAAGCACCATCTTCGACTCCCACACTATCAACTGCATCATTGGCAGCCATTTCTATAGGCAGGGCCTCTTCGATCTTGGTGACTGCTTTGTCCAGGAGGCAGGCGAGCCGGACGAGTTTGCCGCAGCCCTGAAATCATCGTTTCTGGAGCTGCACAGGATACTGGAGGCGATGAGATCTCGAAACCTAGCTCCCGCCCTCGATTGGGCGGCCGCACAGAGCGCCCGCCTGCTGAGCAACGGATCGACCCTCGAGCTCAAGCTTCAACGGCTCCAGTTCCTGGAGATGCTGCAGAGGAAGGGGGACAGGAACGAGGCTATCAGGCATGCAAGGGCTCACCTTGCCCCGTTTGCGCCCACACACAAGGTCGAGATTCAGAAGCTGATGGCATGCCTGCTGTGGGCCGGACGTCTGGATGAATCGCCGTACGCTGACCAATTCTTGTCTCCGTCGCACTGGGACGACATGATCGATGAGGTTACCCGGCAGTTCTGCGGCCTGCTGGGGCAGTCGCACGATTGCCCGCTGAGAGTCGTAATCTCGGCGGGAGCGCAGGGGCTGCCGACACTACTGAAGATGGCGAGCGTTATGGCGGCGAAAGGCCAGCAGCAGGAGTGGCAAGCGATGAGGCAGCTACCGGTGCCGGTAGATCTGAGCAGGGAGCTTCAGTTCCACTCGATCTTCGTCTGTCCCGTGCTCAGGGAACAGGCAAGCGAGGAGAACCCTCCGATGCTGATGCCCTGCGGCCACGTGCTCTCCAAGCAGTCCATTGTGAAGCTGTCGAAGAGCAACACACGGACTTTCAAATGCCCGTACTGTCCGTCCGAGGCCGCCGTTACGCAGTGCAAGCAGCTACACTTTTAGTTTTTCACCACAGACAATACATGTGTGCGTGTACATGTATTTGTGTATGTGCACTGATAATGTATTTCACAGCCTCAGCTCAGATGGCAGGATATGCTGTTTTGGATGAAACTGTGTTACTTTCAGTTATCATACTGTCTTTATGAACTGTTCTCTGCAGTAATTAACCTGTATAAACTATTGTCAATTCCCAGACTCATCTTGTTTCTGTTGTAATTTGCTGCTAAGCAAATTTAGAAGCATAGGAACTTGATTTAAATGTGGTTATAATTCTCATTAAAATTAGGTTAATGCTGTTGGTTAGATGCATATTATTCTTCTCAGGATAGTTAGAATTATTTGAGATATATTTAAAAGTTAGTAGGGA

Network for GWHGAAEX008933

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10607.8	CLTH	148	291	9.40E-29
PF13445.5	zf-RING_UBOX	331	372	3.20E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	61.200
SRP064423	SRR2545915	Juvenile tuber	54.920
SRP108465	SRR5643513	five period of Gastrodia elata	68.250
	SRR5643514	five period of Gastrodia elata	72.960
	SRR5643515	five period of Gastrodia elata	64.250
	SRR5643524	five period of Gastrodia elata	71.970
	SRR5643525	five period of Gastrodia elata	113.790
	SRR5643528	five period of Gastrodia elata	92.650
	SRR5643658	five period of Gastrodia elata	119.580
	SRR5643659	five period of Gastrodia elata	56.850
	SRR5643660	five period of Gastrodia elata	65.150
	SRR5643661	five period of Gastrodia elata	63.270
	SRR5643662	five period of Gastrodia elata	70.330
	SRR5643663	five period of Gastrodia elata	63.230
	SRR5643664	five period of Gastrodia elata	74.340
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	67.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	85.100
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	69.140
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	66.350
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	70.020
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	74.030
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	65.540
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	73.410
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	62.130
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	65.750
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	71.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	71.940
SRP279888	Gastro	Gastrodia elata tuber	84.82
	Juven	Juvenile tuber	97.57
	Mother_Gastro	Mother tuber of Gastrodia elata	113.66
	Mother_Juven	Mother tuber of Juvenile	116.07