Detail information of GWHGAAEX008935/evm.TU.scaffold_23.249
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|194336180|ref|YP_002017974.1| | 1.00E-23 | serine/threonine protein kinase [Pelodictyon phaeoclathratiforme BU-1] |
| KOG | KOG1187 | 6.00E-153 | Serine/threonine protein kinase |
| nr | gi|743833539|ref|XP_010935291.1| | 3.36E-169 | PREDICTED: serine/threonine-protein kinase CDL1-like [Elaeis guineensis] |
| Swissprot | tr|Q0WRY5|CDL1_ARATH | 6.00E-143 | Serine/threonine-protein kinase CDL1 {ECO:0000305} |
| trEMBL | tr|M0U304|M0U304_MUSAM | 9.00E-157 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P23970_001} |
| TAIR | AT1G20650_2 | 6.00E-153 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 5921146 | 5931679 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008935
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 79 | 347 | 1.20E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_RLCK-VIIa-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.170 |
| SRR2545915 | Juvenile tuber | 21.270 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 25.160 |
| SRR5643514 | five period of Gastrodia elata | 27.350 | |
| SRR5643515 | five period of Gastrodia elata | 30.410 | |
| SRR5643524 | five period of Gastrodia elata | 31.310 | |
| SRR5643525 | five period of Gastrodia elata | 38.320 | |
| SRR5643528 | five period of Gastrodia elata | 38.830 | |
| SRR5643658 | five period of Gastrodia elata | 32.770 | |
| SRR5643659 | five period of Gastrodia elata | 34.290 | |
| SRR5643660 | five period of Gastrodia elata | 40.940 | |
| SRR5643661 | five period of Gastrodia elata | 39.480 | |
| SRR5643662 | five period of Gastrodia elata | 27.410 | |
| SRR5643663 | five period of Gastrodia elata | 27.970 | |
| SRR5643664 | five period of Gastrodia elata | 26.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 36.160 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.680 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.520 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.910 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.930 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.150 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.76 |
| Juven | Juvenile tuber | 34.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.25 | |
| Mother_Juven | Mother tuber of Juvenile | 22.06 |