Detail information of GWHGAAEX008936/evm.TU.scaffold_23.250


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG03815.00E-38HMG box-containing protein
nrgi|695064547|ref|XP_009420828.1|1.55E-49PREDICTED: DNA-binding protein MNB1B-like [Musa acuminata subsp. malaccensis]
Swissprottr|P27347|MNB1B_MAIZE3.00E-42DNA-binding protein MNB1B
trEMBLtr|M0RG53|M0RG53_MUSAM6.00E-50Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P07270_001}
TAIRAT1G20690_25.00E-38Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002559317695934966-
Transcript Sequence

Network for GWHGAAEX008936

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00505.18HMG_box441121.80E-21
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyHMG

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms248.520
SRR2545915Juvenile tuber462.400
SRP108465SRR5643513five period of Gastrodia elata305.180
SRR5643514five period of Gastrodia elata332.000
SRR5643515five period of Gastrodia elata289.520
SRR5643524five period of Gastrodia elata284.480
SRR5643525five period of Gastrodia elata153.410
SRR5643528five period of Gastrodia elata161.460
SRR5643658five period of Gastrodia elata147.090
SRR5643659five period of Gastrodia elata336.550
SRR5643660five period of Gastrodia elata326.360
SRR5643661five period of Gastrodia elata355.290
SRR5643662five period of Gastrodia elata296.400
SRR5643663five period of Gastrodia elata339.310
SRR5643664five period of Gastrodia elata317.100
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1329.650
SRR6049655Rhizomagastrodiae_C368-T10_good_1293.340
SRR6049656Rhizomagastrodiae_C368-T07_good_1414.620
SRR6049657Rhizomagastrodiae_C368-T07_good_1320.280
SRR6049658Rhizomagastrodiae_C368-T04_good_1362.510
SRR6049659Rhizomagastrodiae_C368-T04_good_1318.580
SRR6049660Rhizomagastrodiae_C368-T01_good_1335.980
SRR6049661Rhizomagastrodiae_C368-T04_good_1386.940
SRR6049662Rhizomagastrodiae_C368-T01_good_1449.150
SRR6049663Rhizomagastrodiae_C368-T01_good_1407.690
SRR6049664Rhizomagastrodiae_C368-T10_good_1474.530
SRR6049665Rhizomagastrodiae_C368-T10_good_1474.530
SRP279888GastroGastrodia elata tuber 555.09
JuvenJuvenile tuber181.65
Mother_GastroMother tuber of Gastrodia elata 198.77
Mother_JuvenMother tuber of Juvenile 95.84