Gene detail

Detail information of GWHGAAEX008944/evm.TU.scaffold_23.259

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743862150\|ref\|XP_010943463.1\|	2.61E-76	PREDICTED: uncharacterized protein At1g51745 [Elaeis guineensis]
Swissprot	tr\|P59278\|Y1745_ARATH	6.00E-09	Uncharacterized protein At1g51745
trEMBL	tr\|M8A0A5\|M8A0A5_TRIUA	3.00E-56	Uncharacterized protein {ECO:0000313\|EMBL:EMS65717.1, ECO:0000313\|EnsemblPlants:TRIUR3_22307-P1}
TAIR	AT3G03140	3.00E-15	Tudor/PWWP/MBT superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	6125166	6148137	+

Transcript Sequence
>GWHTAAEX008944 AGCAGGGGCGCTTGTGTTTTTTCTTCCCTAAACCTAAATTTCTTAGCCGACTCCCTTCATCCTCCCTGCACAAGGCAGAGCCCCTCCTCCATCCGTCGTTCGCGAGGGTGAATCTCCTAGTCTTCTTCGAAGATCTTCTCCTCCTTTCAGTTCTTGTGGTGCCAAGCGGCACCTTCCCAGTCGATCCATCACCCCGACCGAGCAGCTGCCGAACTTCCCCCTCTCGGCCGAGCTCCAGCACTTCCTCCCGTTCGGCTAGGCGCCGGGCCGAGGGCTCTCCATGCTGACCGATCAGCGGCCGAACAGCATCGACCCTCTTCTTCCATCCGCCGAATCCTTCCTTCTCTTTCTCCTCACATGCAGCATCACTGGTGTTCTTCGCCTAACTCGGAAACAGCTTGTGTTTTTCTTGATTCAAGATTGGTATAATCTTGAAAAACCCAAAAAATCCAAACGTGTGAAGCCATTTCGATGTGAGGAGTTTGATGCATTGATAAAAAAGGCTGAGGCCTCTCGCAGTGTTCCTATTAAGAAAAGGGAGAAATATTCATGCTGGGAAGATGCCATTTTTCATGCCCTTGAGCTTGAAAAACAAAATAATGAGATGAAGCAGGAAAACACAGGAATCTCATTCCATGAGGGCAGTACAACTTCAAGACTTTTAGAAAGAGAGAGAAAGTATAACTCTCCCAAAGTTAATGTTCCTAATAAATTAGCAAACCGGAAATCTCAAATTTCTTCTAGAAAGGTATGTTCACCACGTGATAAAAGTAACATGAACCTTCCAGTACCTGCACATAGAAAAAGAAAGGTTAAACCAAGCATTAGTGAAGATGAAAAGCATGAAAATGCAACTGTTATGTGTGTAGATGTCAATTCTGAAATTAAGTCAAAAGGGAAGCTCTTTCTTTCTGTTGTTGGGGCAAATTCAGATGTTATTGATGAGAGACACACTAATTTTTTCCCTCATGGTCGGCATAACCTGAGATTTACAGATCAGGCAATAATTGACAAGAACTCTGTCCCTAAAAGAACTTTTTTGACCGGTTCAATTGATGATTATTCTGCTAGAAGAAAAGATAGACGTCGTCCTCTACTAAAAGTTTTACAGAATAGCACAAAGTTACCAGATTCTTATTCCTTTCAGCCTCACAATGAAAACAGTGGTAATAGCAGGGCTGCAGAAGAAAGCTTTGTAGGAATCACTCATGACGCACAAAAGAGTGCTGTGCATCCATCACCTGATGATGACTACACTTTAGACTATTCTAGTAAATCATGGAAACATACACTTTCGGATTCTGGGAATACTTGCAAGTTGCAACAGTCTAATGAGAGCACTCCATCTGGATGGACTGAAGAGAATGATTTTGATTCTTCTGCAACAGATTCGGAACTTGAGAATGTTGAAGAAAAGCATAGATCAGGCATCACCCAGCCTCCAAAACTGACCGCCGAAAGCTCTATCGAGAGTGGCATGTCCCATTGGCATCTTAAAGGGAAGCGCAACAATCGAATCGCTCCTAAAAGGCCTCACGGAAATGCGGGCATCACGAATTTTGGTGGCACTGATAAGCCCTCAGATGCCCAAGCAATACTTAATGCTTCTGGGTTGGATGTTTCATCAGAAAAAGAGAATGATAATAATAGCGAGGACAATGTGATATTAATTGAATCGAGGAATGGAAGTGATGATTTTGAGAAACAACACAGCGACTCTGCTTGCTCAGATGAAGACCATATGGTATTAGAGCGAGGTTGGGGAACTGCCAGGCCTCCTTTTCAGATTTGGAAGACGTATTGGGATGAAGAGGTGGGGGAGCCTGAAGGCTTTATCGGGCGCTTTTATGCTTCTCCTTTTAGTTGCAGTATGATTCCGACGTTGTTTGACGTGGATTTGAAGGTTCATGCGAGGTACCGAGGAGAGCGCGTCCCTTTAGTATCTTTGACGAGTGGGCTTAATGGCATGGCAATAGTAGGACATCCCGTGTGCGTCGAAGTGCTAGAGGATGGATCCATAGATCAGCTTCTTTTCACGCTCGAGAAAAAGCTAGATGGAGACGCCTCCACGCCTCCACCTATTTGGAGAACCTCCAAACGAACTCTGATGCATCGCCCCCCTCGTTCGAATTCCAATCCGCCAAGCCGCACCCAGCACCTGGCTTCCCAAACTAAGAAGAAAACTCGCCCGCTCTCGTCCTTTGTTTCTGAGAAGAAACAGAAGCAGCGGCTTGGTGGCAGAAGCATTTTTATGGGTGGATCAATGCCTTTGGTGACATGCATCCCCATGAAGGTAGTATTCAGCAGGATACTGGAATCTGTTGGGAGGTCGCCGACTTGGCGGACAACCGCAGCAGATGCAGAAAGAGGCCCATCTTAATTGAACTTTCCATTCCCTTTAATTCTCTTAAAAAATAAGCTTGTTCAGAGAGCCTTGATCTGCAGATTTGCACATTGTTCAACAATTTAGTAGTCTGTTGAGTTCTGAGTTTTTTTCTTGGGAATTTTAACCACCCCAAAGATTTATATTTTGCATATCCAGCATCCAAACTTTAGAATTGAAGAAAAATACACTACCTCTCCTCATGTCAACTTATTGTCTGAAGAGTATTATGATTGATAAAATGATAGGATTTTCTATGTAAATATTAAAAATTGGGTGCTATGTATGCAAAACCCCCTTTCCCCTGATTAACAGTCCTGTGTAAAGTGCTAACTTTGACATTAAGATCCTCCAATTTAGTTTATAATCCTCATGAGAAATTTAATTTTATATTTTTATTTGTATTGGTAAGATTGCTACATTATATTATATAGATTTTAAAGAAATATGTGTATTTATC

Network for GWHGAAEX008944

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.220
SRP064423	SRR2545915	Juvenile tuber	21.290
SRP108465	SRR5643513	five period of Gastrodia elata	19.130
	SRR5643514	five period of Gastrodia elata	18.700
	SRR5643515	five period of Gastrodia elata	23.820
	SRR5643524	five period of Gastrodia elata	19.000
	SRR5643525	five period of Gastrodia elata	24.910
	SRR5643528	five period of Gastrodia elata	24.040
	SRR5643658	five period of Gastrodia elata	25.610
	SRR5643659	five period of Gastrodia elata	22.400
	SRR5643660	five period of Gastrodia elata	21.410
	SRR5643661	five period of Gastrodia elata	20.040
	SRR5643662	five period of Gastrodia elata	24.190
	SRR5643663	five period of Gastrodia elata	19.750
	SRR5643664	five period of Gastrodia elata	17.340
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.810
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.620
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.010
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.730
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	17.630
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.800
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.450
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.050
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.280
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.280
SRP279888	Gastro	Gastrodia elata tuber	18.48
	Juven	Juvenile tuber	18.84
	Mother_Gastro	Mother tuber of Gastrodia elata	24.35
	Mother_Juven	Mother tuber of Juvenile	27.04