Detail information of GWHGAAEX008945/evm.TU.scaffold_23.260
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3002 | 4.00E-168 | Zn finger protein |
| nr | gi|743859361|ref|XP_010942715.1| | 2.81E-179 | PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Elaeis guineensis] |
| Swissprot | tr|Q9M2P4|SINA2_ARATH | 1.00E-168 | E3 ubiquitin-protein ligase SINAT2 |
| trEMBL | tr|M0RQC1|M0RQC1_MUSAM | 9.00E-173 | E3 ubiquitin-protein ligase {ECO:0000256|RuleBase:RU201113} |
| TAIR | AT3G58040 | 4.00E-168 | seven in absentia of Arabidopsis 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 6152097 | 6162385 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008945
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03145.15 | Sina | 91 | 290 | 3.20E-74 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04506 | SIAH1 | Ubiquitin mediated proteolysis | map04120 |
| MAPK signaling pathway - fly | map04013 | ||
| Wnt signaling pathway | map04310 | ||
| p53 signaling pathway | map04115 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process |
| GO:0007275 | Biological Process | multicellular organism development |
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 32.390 |
| SRR2545915 | Juvenile tuber | 25.100 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.360 |
| SRR5643514 | five period of Gastrodia elata | 22.070 | |
| SRR5643515 | five period of Gastrodia elata | 21.480 | |
| SRR5643524 | five period of Gastrodia elata | 20.010 | |
| SRR5643525 | five period of Gastrodia elata | 20.610 | |
| SRR5643528 | five period of Gastrodia elata | 20.180 | |
| SRR5643658 | five period of Gastrodia elata | 18.880 | |
| SRR5643659 | five period of Gastrodia elata | 29.080 | |
| SRR5643660 | five period of Gastrodia elata | 28.530 | |
| SRR5643661 | five period of Gastrodia elata | 31.850 | |
| SRR5643662 | five period of Gastrodia elata | 31.430 | |
| SRR5643663 | five period of Gastrodia elata | 34.300 | |
| SRR5643664 | five period of Gastrodia elata | 32.460 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 26.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 27.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 31.210 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 28.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 29.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 26.600 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.270 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 38.02 |
| Juven | Juvenile tuber | 26.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 32.76 | |
| Mother_Juven | Mother tuber of Juvenile | 21.87 |