Gene detail

Detail information of GWHGAAEX008948/evm.TU.scaffold_23.263

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|17233212\|ref\|NP_490302.1\|	2.00E-32	ABC transporter ATP-binding protein [Nostoc sp. PCC 7120]
KOG	KOG0065	0	Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily
nr	gi\|719994699\|ref\|XP_010254256.1\|	0	PREDICTED: pleiotropic drug resistance protein 1-like [Nelumbo nucifera]
Swissprot	tr\|Q8GU89\|PDR4_ORYSJ	0	Pleiotropic drug resistance protein 4
trEMBL	tr\|M0TWK6\|M0TWK6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P01490_001}
TAIR	AT1G15520	0	pleiotropic drug resistance 12

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	6179831	6188332	+

Transcript Sequence
>GWHTAAEX008948 TACATAAAATCAATCTTTTTTTATATTTGAGACAAATTACTTAGTTTTGAAAAAAATTAGGAGAAAATTTAGAGTAAAAAACGCTTCAATTTTCCTGGTAATCCTAACTATAACACTGCTTCTGCTTTTTTTGTTAACTAAGATTATAAATACTAGAGATTCTGATGACTTTGAGCAAAGTTGGCATAGGCTCTTCAAAAAGAGACTTGACTAAGGTGTTCTAATTAAGAGGTAAAAATTAGTGGGCAGCGTGCCCCATCAAGAACGCGTGCCTGAGAAAATTTATTTTTTTTTCCTGCAAAAACATGGGTTTTGCTAATTATTTCCATATTGTACCAAGCAAGAAGAGACCTTTCACAATCCTACATAATGTTAGTGGAATAATCAAGCCTCGGCGAATGACTTTGCTACTTGGTCCTCCGGCCTCTGGGAAGACCACTATGTTATTGGCTTTGGCTGGGAAGCTAGGCTCTGATCTTAAGGTTTCAGGTAAAGTGACATACAACGGTCATGGAATGAATGAATTTGTACCCCAGCGCACTGCAGCTTATATAAGTCAGCATGATCTTCATATGGGAGAGATGACAGTAAGAGAAACCCTAATGTTCTCTGCAAGATGTCAGGGAGTCGGATGTCGCTATGATATGCTGACAGAGCTTTCCAGGAGAGAAAAGGCAGCAAAAATCAAGCCAGACCCTGATATCGATGTCTTCATGAAGGCAACATCAATGGAAGGAAAAGAAACTGGAGTAACCACTGATTACATTATGAAGATTCTAGGACTAGATGTATGTGCCGATACTATGATTGGAGATGAAATGTTAAGAGGTATTTCTGGAGGACAAAAACGACGTGTCACCACAGGTGAAATGATTGTTGGACCAGCACAAGCATTGCTTATGGATGAAATATCCAATGGTTTGGATAGTTCCACCACTTTTCAGATTGTAAACTCAATAAGGCAAATAATTCACATTCTCGGCGGAACAGCTGTTGTCTCTTTGCTTCAACCGGCACCTGAGACCTATGAGCTTTTTGACGATATCATTATTTTATCGGATGGGATAATTGTTTATCAGGGCCCCCGAAAAGATGTTCTAGAATTCTTCCTGTTCATGGGCTTCAGTTGCCCAGAGAGGAAGGGTGTAGCAGATTTCCTGCAAGAGGTGACATCCAAGAAAGATCAAAAACAGTATTGGATACAGAGTGATAAACCATACAAATATATATCAGTGGCAGAGTTCGCAGAAGCATTTCAGTCATTCCATGTAGGGAAAGCTCTGAAACAAAATCTGTCTGTTCCATTTGATAAGATGAATAGCCACCCTGCTGCTTTGACAACTTCAAAGTACGGCGTTAGTAGGATGGAGCTGCTGAAAGCTTGTGCTGAGAGAGAGCTATTGCTACTGAAAAGGAACTCTTTCGTTTACGCATTCAGAGCATCTAAGGTGTTGGTTATGACATTCATCATGATGACACTCTTCCTGAGGATCAAAATGCACCACCGATCTGAAAATGATGGATTTATTTATCTGGGGGCTCTTTTCTTTGCTATTGTTAATATAATGTTCAACGGATTTTCTGAACTTGCAATGACAATTGCTAAGCTGCCTGTCTTCTTCAAGCAAAGGGATTCTCTTTTTTATCCTTCATGGACTTACGCAATGCCGACATGGATTTTGAAGATTCCATTTTCAGTTCTAGAAGTTTGCATCTTAGCAATGCTGAGTTACTATGTTGTCGGCTTCGATCCGAGTGTTCAGAGGTTCTTCAAACAGTATGCTGTGCTTCTTCTGGTCCATCAGATGGCTGCTGGACTATTTCGCTTTGTCGCTGCAATCGGTAGGAACATGTTTATGGCAGCGGCAGTATCATTCTTCATACTGTTTGTTTTTCTTGTATTGGGTGGATACATCATTGCACATGATGATATTAAGAAGTTCTGGATTTGGGGCTACTGGATGTCACCGCTAATGTATTCGCAAACTGCTGTTTCAGTGAACGAATTCCTTGGGAAAAGTTGGAGCCATAAATTGCCTGGATCAAATCAGACTCTTGGTATTACTATCTTGAAGTCTAGAGGAATATTTACTGAAGCAAAATGGTACTGGATTGGTGTCGCTGCTCTATGCGGATATGTTCTTCTGTTCAATTTTCTTTTCACAGTATCTTTGGCCTATCTCAAACCTATTAGAAAAGGTCAAAATGTAATTTCTGAAGAGCTTTTGAAGGCAAGGCAAATGAATAAAACTAAGACTGCTGAACTTACGTTGTCTGAAAGTGCAACCTCTAATCCCCGGTCAGCTTCAAGAAAAAAATCTTCGACGTCTTCCGTACGTGATTCTAATTTGACCGATTTAAACGCAAGGAAAGAAAAGGCTCTTACATTCACGTCTGTTTCCATCGCATTTGATGACATAAAATACTCAGTAGACATGCCACAGGAAATGAAAGCGAATAGTGCTGAAGACAAATTGACCCTTCTAAAGGGTGTGAGTGGTTGCTTCAGGCCCGGAGTTCTCACAGCTCTTATGGGTGTTAGCGGAGCAGGGAAGACCACTCTAATGGATGTTCTTGCAGGAAGGAAAACCGGCGGATATATAGAGGGAAGTATTACTATATCCGGCTATCCTAAGAAGCAAGAAACCTTTGCCCGCGTGTCGGGATATTGCGAACAGAATGACATACATTCTCCACATGTGACAGTGTATGAATCTCTCGTATACTCGGCATGGCTTCGGCTTCCCTCCGAAGTTGATTCTATAACAAGAGAAATGTTCATTGAAGAGGTAATGGAGCTTGTGGAGATGACATCATTGAGGGGAGCGCTGGTCGGATTGCCCGGAATAAGCGGGCTGTCGACTGAGAAGCGCAAGAGGCTAACCATTGCAGTGGAGCTCATTGCAAATCCTTCCATTATATTCATGGATGAGCCTACCTCCGGGCTCGATGCAAGGGCAGCCGCAATTGTAATGAGAGCAGTGAGAAACACCGTCGACACCGGGAGAACTGTTGTCTGTACAATTCACCAGCCTAGCATTGATATATTTGAAGCTTTCGATGAGCTGTTCCTGATGAAGAGAGGAGGAGAAGAGATATACGTGGGACCCTTAGGGCACAACTCTTGCCATCTCATCACATATTTTGAGGGAATTCAAGGTGTAAGTAAGATTAAAGATGGCCATAATCCAGCAACATGGATGTTGGAAGTAACCACACCAGCACAAGAACATCTGTTAGGCATCAGCTTCAATGAAGTATACAAGGGATCTAAACTTTATCAGAGGAACAAAGCTATGATAGAAGAACAGAGCAAACCGGCTGCGGGTTCTCGTGATCTGCATTTTCCTACAAGATATTCTCAGCCAGTCGTGGTCCAGTGCCTAGCTTGCCTGTGGAAACAGCATTTGTCATACTGGAGGAACTCTTCTTACACTGTGCTGAGATTTGTTTTCACCATGGTGATTGCATTGATGCTTGGGACAATCTTTTGGGGTCTTGGCAGCAAAAGGGGGAAACAGCAAGACCTGTTCAACGCATTGGGCTCAATGCACACGGCCGTCCTGTTCGTGGGAATCTCGTATTCAAATGGCGTGCAGCCCGTCATCGCGATCGAACGCACGGTTTTTTATAGGGAGAAAGCTGCCGGAATGTACTCTTCTCTGCCCTATGCTTTCGCACAGATTGTGATCGAGCAACCATACGTATTAATCCAGTCTATAATGTACAGCACTTTAATATATGCGATGATTGGGTATGAGTGGCAGGCAGCCAAATTCTTATGGTATCTCTTCTTCACATACTTTTCGCTGCTCTACTTCACATACTATGGAATGCTGGCTGTCAGCCTGACACCCAACCTGAACATAGCTTCCATAGTGGTTTCTGCATTCTACAGCATCTGGAATATTTTCGCCGGATTCATCGTCCCGCGGCCGAGAATGCCTGCTTGGTGCGTATGGTACTACTGGGCTTGCCCCGTCTCATGGTCCTTGTATGGATTGCTTGTGTCTCAGTATGGGGATGTGGAGGAGAAGCTAGATACAGACCAAATGGTCGCTGATTTTTTAAAGAGCTATTTCGGATTCAGGCACGACTTCTTGGGACCTGTTGCCGCCATGGTCATCTTCTTCGCACTTTTATTTGCTCTTCTCTTTGGGCTTGCACTCAAAGTTCTCAACTTCCAGAGAAGATAA

Network for GWHGAAEX008948

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.26	ABC_tran	20	203	2.70E-13
PF01061.23	ABC2_membrane	356	568	1.70E-40
PF08370.10	PDR_assoc	573	636	3.70E-27
PF00005.26	ABC_tran	727	879	2.70E-19
PF01061.23	ABC2_membrane	1025	1238	6.60E-50

Protein Sequence

>GWHPAAEX008948
MGFANYFHIVPSKKRPFTILHNVSGIIKPRRMTLLLGPPASGKTTMLLALAGKLGSDLKVSGKVTYNGHGMNEFVPQRTAAYISQHDLHMGEMTVRETLMFSARCQGVGCRYDMLTELSRREKAAKIKPDPDIDVFMKATSMEGKETGVTTDYIMKILGLDVCADTMIGDEMLRGISGGQKRRVTTGEMIVGPAQALLMDEISNGLDSSTTFQIVNSIRQIIHILGGTAVVSLLQPAPETYELFDDIIILSDGIIVYQGPRKDVLEFFLFMGFSCPERKGVADFLQEVTSKKDQKQYWIQSDKPYKYISVAEFAEAFQSFHVGKALKQNLSVPFDKMNSHPAALTTSKYGVSRMELLKACAERELLLLKRNSFVYAFRASKVLVMTFIMMTLFLRIKMHHRSENDGFIYLGALFFAIVNIMFNGFSELAMTIAKLPVFFKQRDSLFYPSWTYAMPTWILKIPFSVLEVCILAMLSYYVVGFDPSVQRFFKQYAVLLLVHQMAAGLFRFVAAIGRNMFMAAAVSFFILFVFLVLGGYIIAHDDIKKFWIWGYWMSPLMYSQTAVSVNEFLGKSWSHKLPGSNQTLGITILKSRGIFTEAKWYWIGVAALCGYVLLFNFLFTVSLAYLKPIRKGQNVISEELLKARQMNKTKTAELTLSESATSNPRSASRKKSSTSSVRDSNLTDLNARKEKALTFTSVSIAFDDIKYSVDMPQEMKANSAEDKLTLLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSITISGYPKKQETFARVSGYCEQNDIHSPHVTVYESLVYSAWLRLPSEVDSITREMFIEEVMELVEMTSLRGALVGLPGISGLSTEKRKRLTIAVELIANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHNSCHLITYFEGIQGVSKIKDGHNPATWMLEVTTPAQEHLLGISFNEVYKGSKLYQRNKAMIEEQSKPAAGSRDLHFPTRYSQPVVVQCLACLWKQHLSYWRNSSYTVLRFVFTMVIALMLGTIFWGLGSKRGKQQDLFNALGSMHTAVLFVGISYSNGVQPVIAIERTVFYREKAAGMYSSLPYAFAQIVIEQPYVLIQSIMYSTLIYAMIGYEWQAAKFLWYLFFTYFSLLYFTYYGMLAVSLTPNLNIASIVVSAFYSIWNIFAGFIVPRPRMPAWCVWYYWACPVSWSLYGLLVSQYGDVEEKLDTDQMVADFLKSYFGFRHDFLGPVAAMVIFFALLFALLFGLALKVLNFQRR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	23.560
SRP064423	SRR2545915	Juvenile tuber	33.490
SRP108465	SRR5643513	five period of Gastrodia elata	69.670
	SRR5643514	five period of Gastrodia elata	24.120
	SRR5643515	five period of Gastrodia elata	108.130
	SRR5643524	five period of Gastrodia elata	57.460
	SRR5643525	five period of Gastrodia elata	25.090
	SRR5643528	five period of Gastrodia elata	37.560
	SRR5643658	five period of Gastrodia elata	14.990
	SRR5643659	five period of Gastrodia elata	80.690
	SRR5643660	five period of Gastrodia elata	35.750
	SRR5643661	five period of Gastrodia elata	73.630
	SRR5643662	five period of Gastrodia elata	67.020
	SRR5643663	five period of Gastrodia elata	56.970
	SRR5643664	five period of Gastrodia elata	59.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.630
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	24.590
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.230
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	32.830
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.300
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	26.620
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	25.660
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.970
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.970
SRP279888	Gastro	Gastrodia elata tuber	29.55
	Juven	Juvenile tuber	29.15
	Mother_Gastro	Mother tuber of Gastrodia elata	43.95
	Mother_Juven	Mother tuber of Juvenile	90.15