Detail information of GWHGAAEX008950/evm.TU.scaffold_23.266
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|357387229|ref|YP_004902067.1| | 2.00E-70 | putative amino acid transporter [Kitasatospora setae KM-6054] |
| KOG | KOG1287 | 0 | Amino acid transporters |
| nr | gi|672191832|ref|XP_008775609.1| | 0 | PREDICTED: probable polyamine transporter At1g31830 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9C6S5|PHSB_ARATH | 0 | Probable polyamine transporter At1g31830 |
| trEMBL | tr|B9S1L4|B9S1L4_RICCO | 0 | Amino acid transporter, putative {ECO:0000313|EMBL:EEF42483.1} |
| TAIR | AT1G31830 | 0 | Amino acid permease family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 6268412 | 6289857 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008950
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13520.5 | AA_permease_2 | 46 | 426 | 3.70E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.990 |
| SRR2545915 | Juvenile tuber | 6.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.060 |
| SRR5643514 | five period of Gastrodia elata | 15.780 | |
| SRR5643515 | five period of Gastrodia elata | 13.880 | |
| SRR5643524 | five period of Gastrodia elata | 13.550 | |
| SRR5643525 | five period of Gastrodia elata | 13.620 | |
| SRR5643528 | five period of Gastrodia elata | 10.560 | |
| SRR5643658 | five period of Gastrodia elata | 13.290 | |
| SRR5643659 | five period of Gastrodia elata | 12.060 | |
| SRR5643660 | five period of Gastrodia elata | 10.020 | |
| SRR5643661 | five period of Gastrodia elata | 11.810 | |
| SRR5643662 | five period of Gastrodia elata | 11.020 | |
| SRR5643663 | five period of Gastrodia elata | 10.790 | |
| SRR5643664 | five period of Gastrodia elata | 9.840 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.180 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.820 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.140 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.930 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.490 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.330 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.330 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.13 |
| Juven | Juvenile tuber | 14.07 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.52 | |
| Mother_Juven | Mother tuber of Juvenile | 10.63 |