Detail information of GWHGAAEX008953/evm.TU.scaffold_23.269


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08092.00E-158SNARE protein TLG2/Syntaxin 16
nrgi|743854128|ref|XP_010940819.1|1.61E-177PREDICTED: syntaxin-41-like [Elaeis guineensis]
Swissprottr|Q9SUJ1|SYP43_ARATH7.00E-159Syntaxin-43
trEMBLtr|U5D5W4|U5D5W4_AMBTC3.00E-170Uncharacterized protein {ECO:0000313|EMBL:ERN16822.1}
TAIRAT3G057102.00E-158syntaxin of plants 43

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002563258216334120-
Transcript Sequence

Network for GWHGAAEX008953

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05739.18SNARE2643161.20E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08489STX16 SNARE interactions in vesicular transport map04130

Gene Ontology

GO term OntologyName
GO:0016192Biological Processvesicle-mediated transport
GO:0006886Biological Processintracellular protein transport
GO:0005484Molecular FunctionSNAP receptor activity
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.780
SRR2545915Juvenile tuber25.310
SRP108465SRR5643513five period of Gastrodia elata19.730
SRR5643514five period of Gastrodia elata16.250
SRR5643515five period of Gastrodia elata13.870
SRR5643524five period of Gastrodia elata14.590
SRR5643525five period of Gastrodia elata18.900
SRR5643528five period of Gastrodia elata17.130
SRR5643658five period of Gastrodia elata20.200
SRR5643659five period of Gastrodia elata18.510
SRR5643660five period of Gastrodia elata20.050
SRR5643661five period of Gastrodia elata17.770
SRR5643662five period of Gastrodia elata20.530
SRR5643663five period of Gastrodia elata18.690
SRR5643664five period of Gastrodia elata20.310
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.370
SRR6049655Rhizomagastrodiae_C368-T10_good_114.900
SRR6049656Rhizomagastrodiae_C368-T07_good_117.510
SRR6049657Rhizomagastrodiae_C368-T07_good_118.480
SRR6049658Rhizomagastrodiae_C368-T04_good_116.540
SRR6049659Rhizomagastrodiae_C368-T04_good_122.240
SRR6049660Rhizomagastrodiae_C368-T01_good_116.330
SRR6049661Rhizomagastrodiae_C368-T04_good_114.650
SRR6049662Rhizomagastrodiae_C368-T01_good_113.700
SRR6049663Rhizomagastrodiae_C368-T01_good_115.980
SRR6049664Rhizomagastrodiae_C368-T10_good_117.250
SRR6049665Rhizomagastrodiae_C368-T10_good_117.250
SRP279888GastroGastrodia elata tuber 19.95
JuvenJuvenile tuber15.60
Mother_GastroMother tuber of Gastrodia elata 15.96
Mother_JuvenMother tuber of Juvenile 19.62