Gene detail

Detail information of GWHGAAEX008962/evm.TU.scaffold_23.277

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0152	Spliceosomal protein FBP11/Splicing factor PRP40
nr	gi\|743776455\|ref\|XP_010918635.1\|	PREDICTED: pre-mRNA-processing protein 40A isoform X1 [Elaeis guineensis]
Swissprot	tr\|B6EUA9\|PR40A_ARATH	Pre-mRNA-processing protein 40A
trEMBL	tr\|M0RYS0\|M0RYS0_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P10610_001}
TAIR	AT1G44910	pre-mRNA-processing protein 40A

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	6444437	6475577	-

Transcript Sequence
>GWHTAAEX008962 ATGATGGCCAGCAATCCGCAATCTTCTGCCCCACAGCCCGTAAGACCTTCAGTCATAGGATCTTCTGGTCTACCTCAAAATTTTGGTCCTCCTATGCCCATGCAGTTTAGACCTGTTGCTCCACCTCAGCAATCACATCCGTTCAATCCTGCAGCGGCCCCACAATTTAGACCAACCGTGCAAGGCTTAACTGGGCCAAATTATGGAATTTCTGGTCAAACTCAGGCTATTCCAATGCCATACCCTCAGCCAAATAGGCCCATCACTTCTGGTGTAATTCACACCCCACAAAGCTTACAAGCGCCAAATAATATTATGCCTAATCTCAGTGGAGTTGGAATGCCCCTTTCTTCTTCATACACATTTGCAACATCTTATAGTCAGTTTCCAAATAGTTTGAATGCCTCTTCACAGTATCAGCCAGCAATCCATGTGCATGCACCTGTTGTATCTGCTGGTGGACCTGCTTGGGCTGTATCTGGGGCACAAAGCTTGCCTCCTTCAATATCTCCTTTGATCCAGGCTTCACAACAGCCTGTGTCTGCAAGTTCTGCAGCAATGTGCACTTCTGTACAACCTGGTCAAACTGAGCAGGCAGCCTCTGATTGGCAAGAACACACTGCTGCAGATGGAAAAAGGTATTATTATAACAAAAAGACCAGACAGTCTAGTTGGGAGAAGCCTTTTGAACTTATGACGCCTACTGAGAGGGCTGATGCGTCTACAGAGTGGAAAGAATTCCAAACGCCTGATGGTCGGAAATATTATTATAACAAATTGACGAAACAATCAAAATGGACAATTCCTGAAGAACTCAAGTTAGCTCGTGAGCAGGCAGATAAGGCATCTAATCAGCCAGCCTCTGCAGAACCTGTTGTTACTTCACTTACTTCAGTATCTCAGAGTCCGAGTGTTGAGATACCTTCATCAACTACAGTTAATGATTCAACTCCTCCAATGACAAGTGTTGTAGAAAGCCCGGTTTCAGCACCAGTTTCAAATCCGGTTGCTTCCTTAACTTCTGTATCAACAGCCAGTGCTGATGTAGTGGCTGGAATACCTTCTGGTTCTTCTTTTGTAACTGCAGCTCCAGTTTCTGTGTCAGACCCTAATGCCACTACTGCTGCAGTGGCAATATCTGTTTCTAGATGCTCAGAGAGTGTTACTGCCACAACAGATGTTCCACTTGGGAGTACAATGAACAGCAGCGAGGATATATCTTTGCACAATGTTGTAAATGCATCAGATGGAGCATCTGTTCAGGATCTGGAGGAAGCAAAAAGAGGCATGCCCACTTCTGGAAAAATAAATGTAACTCCTGTGGAAGAAAAATCAGTTGATGAGGAGCCTTTGATTTATGCTAATAAGCAGGAGGCAAAAAATGCCTTCAAATCACTGCTCGAGTCTGCAAATGCTGAAGCTGATTGGACTTGGGAGCAGACGATGAGACTCATTATAAATGATAAAAGATACGGCGCTCTAAAGACCTTGGGGGAGAGGAAACAAGCATTTAATGAGTACTTGGGCCAAAGGAAGAAACTTGAAGCTGAGGAGCGGCGTAACCGGCAGAAAAAGGCCCGTGAGGATTTCTTAAAAATGTTAGAGGAATGCAAGGATCTTACTTCGTCTACCAAGTGGAGCAAAGCTGTCACCATGCTTGAAAACGATGAACGATTTAGTGCTATTGACCGGGCTAGAGACCGTGAAGATTTGTTTGAGAACTACCTTGTTGAACTTCAGAAGAAGGAAAGAACAAAGGCAGCTGAAGAGCATAAGCAATATATAATTGATTATAGAGCTTTTTTGGAATCTTGCGATTTTATAAAGGCAACTACCCAGTGGAGGAAAGTTCAGGATCGTTTGGAGGATGATGAAAGATGTTCTCGACTAGAAAAAATTGACCGGCTCGAGATTTTTCAGGAATACATCCAAGATTTAGAGAAGGAAGAAGAGGAGCAAAAGAAGATACAAAGGGAGCAATTACGTCGGCAAGAGAGAAAACACCGTGATGCGTTTCGCAAGTTGATGGAAGGTGACATTGTTACAGGCGTTCTTACAGCCAAGACTCATTGGCGTGACTATTGTATTAAGGTCAAAGATTCCGCACCCTATTTGGCAGTATCATCAAATACATCGGGCTCCACACCAAAAGATCTTTTTGAAGATGTTGCGGAGGAGCTTGATAAGCAGTTTCATGATGACAAGGCGGTAATCAAAGAGGCTATTAAAAGTGGAAAAATTAGTTTGACATCAGCTTGGACATTTGAAAAGTTTAAGGCTTCAATTTCGGAGAATGATACTTTGAAAGGATTATCTGAGATAAATTTAAAGTTCTTCTTTGATGAGCTTTTGGAGCGGCAAAAAGAGAAAGAGGAGAAGGAAGCTAAAAAGCGTCAACGACTTGCAGATAATTTTTCTGATTTGCTTTACTCAATCAAGGAGATTACTGCCTCTTCAAAATGGGATGAAACTAAATCAATTTTTGAAGACAGTCAAGAATATAGATCTATTGGAGAAGAGAGCTCCGCAAGGGAGATTTTTGAAGATTATGTTTCCCTTTTGCAAGAAAAGATAAAGGAAAAGGAACGGAAAAGGGATGAAGATAAGGCAAAAAAAGAGAGGGATAGGGAAGAGAAGGAAAAAAAGAAAGAGAAGGAGAGGAAGGAAAAAGAGAAAGAGCGTGAAAAGGACAAAGCGAAGGAACGATCACGAAAGGATGATGCTGAAAGTGAAAATGTTGATGTCACCACTAACCATGGAATGAAGGATAGGAAAAGGGAAAAAGACAAGGATAGGAAGCATAGAAAACATCATCACAATGCAGGAGATGATGTAAGCTCAGAGAAGGATGAGAAAGAAGACTCTAAGAAATCAAGAAGGCATAGCAGTGACAAGAAGAAATCTAGAAAGCATGGTTATGCTACTGATTCCGACAGTGAAAACCGTCACAAGAAGCATAAGAAAGATCGTGATATATCCCGCAGAAATGGTGTTTATGAGGAGCTTGAAGATGGGGAGCTTGGAGAGGATGGAGAAATCCGTTAG

Network for GWHGAAEX008962

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00397.25	WW	201	228	9.00E-10
PF00397.25	WW	243	269	6.00E-08
PF01846.18	FF	458	507	2.10E-13
PF01846.18	FF	525	575	7.20E-16
PF01846.18	FF	597	642	1.90E-06
PF01846.18	FF	803	850	2.30E-08

Protein Sequence

>GWHPAAEX008962
MMASNPQSSAPQPVRPSVIGSSGLPQNFGPPMPMQFRPVAPPQQSHPFNPAAAPQFRPTVQGLTGPNYGISGQTQAIPMPYPQPNRPITSGVIHTPQSLQAPNNIMPNLSGVGMPLSSSYTFATSYSQFPNSLNASSQYQPAIHVHAPVVSAGGPAWAVSGAQSLPPSISPLIQASQQPVSASSAAMCTSVQPGQTEQAASDWQEHTAADGKRYYYNKKTRQSSWEKPFELMTPTERADASTEWKEFQTPDGRKYYYNKLTKQSKWTIPEELKLAREQADKASNQPASAEPVVTSLTSVSQSPSVEIPSSTTVNDSTPPMTSVVESPVSAPVSNPVASLTSVSTASADVVAGIPSGSSFVTAAPVSVSDPNATTAAVAISVSRCSESVTATTDVPLGSTMNSSEDISLHNVVNASDGASVQDLEEAKRGMPTSGKINVTPVEEKSVDEEPLIYANKQEAKNAFKSLLESANAEADWTWEQTMRLIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRNRQKKAREDFLKMLEECKDLTSSTKWSKAVTMLENDERFSAIDRARDREDLFENYLVELQKKERTKAAEEHKQYIIDYRAFLESCDFIKATTQWRKVQDRLEDDERCSRLEKIDRLEIFQEYIQDLEKEEEEQKKIQREQLRRQERKHRDAFRKLMEGDIVTGVLTAKTHWRDYCIKVKDSAPYLAVSSNTSGSTPKDLFEDVAEELDKQFHDDKAVIKEAIKSGKISLTSAWTFEKFKASISENDTLKGLSEINLKFFFDELLERQKEKEEKEAKKRQRLADNFSDLLYSIKEITASSKWDETKSIFEDSQEYRSIGEESSAREIFEDYVSLLQEKIKEKERKRDEDKAKKERDREEKEKKKEKERKEKEKEREKDKAKERSRKDDAESENVDVTTNHGMKDRKREKDKDRKHRKHHHNAGDDVSSEKDEKEDSKKSRRHSSDKKKSRKHGYATDSDSENRHKKHKKDRDISRRNGVYEELEDGELGEDGEIR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12821	PRPF40, PRP40	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	142.970
SRP064423	SRR2545915	Juvenile tuber	161.010
SRP108465	SRR5643513	five period of Gastrodia elata	70.420
	SRR5643514	five period of Gastrodia elata	56.730
	SRR5643515	five period of Gastrodia elata	57.280
	SRR5643524	five period of Gastrodia elata	55.540
	SRR5643525	five period of Gastrodia elata	44.300
	SRR5643528	five period of Gastrodia elata	36.640
	SRR5643658	five period of Gastrodia elata	46.670
	SRR5643659	five period of Gastrodia elata	79.820
	SRR5643660	five period of Gastrodia elata	88.120
	SRR5643661	five period of Gastrodia elata	83.050
	SRR5643662	five period of Gastrodia elata	86.470
	SRR5643663	five period of Gastrodia elata	78.930
	SRR5643664	five period of Gastrodia elata	100.650
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	85.650
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	86.480
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	77.110
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	106.520
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	99.220
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	119.880
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	102.090
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	104.490
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	72.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	86.050
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	66.510
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	66.510
SRP279888	Gastro	Gastrodia elata tuber	70.92
	Juven	Juvenile tuber	81.32
	Mother_Gastro	Mother tuber of Gastrodia elata	30.14
	Mother_Juven	Mother tuber of Juvenile	53.22