Gene detail

Detail information of GWHGAAEX008964/evm.TU.scaffold_23.279

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428320364\|ref\|YP_007118246.1\|	6.00E-16	WD-40 repeat-containing protein [Oscillatoria nigro-viridis PCC 7112]
KOG	KOG0264	3.00E-162	Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1
nr	gi\|672172959\|ref\|XP_008806593.1\|	0	PREDICTED: LOW QUALITY PROTEIN: histone-binding protein MSI1-like [Phoenix dactylifera]
Swissprot	tr\|O22467\|MSI1_ARATH	1.00E-162	Histone-binding protein MSI1
trEMBL	tr\|M0TVZ7\|M0TVZ7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P33950_001}
TAIR	AT5G58230	3.00E-162	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	6557721	6599860	-

Transcript Sequence
>GWHTAAEX008964 ATGCAGGGAGCCGAAGAAGCAGCGGCATCCGCGGCGGAGGAATTCAGAGTGTGGAGGAAGAACAGCCCATTCCTCTACGACCTCCTCATTTCCCATGCTCTCGAATGGCCATCTCTCACAGTCCAATGGATCTCCTCTTCATCACACTCATCTTCCTCTCCGACCCAGCGCCTCATTCTGGGCACTCACACCTCTAACGACACACCCAACTTCCTGATGATCTCCTCCGTTCAGATCCAGACTCATCCGCATCTTTCCGGTGATCCATTGCGGGGTTCGAGTCCCTCTCCGATCCCCAGCGCGCGGGTCGAACAGAAGATCAGGCACGAGGGAGAGGTGAATCGAGCAAGGTACATGCCGCAGAATGGTTTTCTGATCGCGACCAAGACATGTGGGTCGGAGGTTCACGTCTTCAACTCCGAAAAACGGCCTTTGATTCCGCCGGAGGGGGAGGCTTGCAGACCCGAGCTGGTGCTGAGGGGACACTCGACGGAAGGATATGGCCTATCATGGAGCCCGAGAAAGGATGGATACCTTTTAAGTGGCTCCTACGATTCTAGGATTTGTCTGTGGGATGTTGGCGTTGCCACAAATGAGAAGGGTCTTGATGCCAAGGAGGTATTTGAGGCTCACGATGCTGCAGTTGAAGATGTTGATTGGCACGCTGAGAATGAGACTATGTTTGGTTCCGTTGGCGATGATCATCGTCTGATGCTGTGGGACTTGCGTTCACCAAGAAAACCGGAGCATTCAGTTATAGTTCATGATGACGAGGTTAACAGTTTATCTTTTAATCCCTTTAATAACTGGCTTATTGCAACTGCGTCCGTGGATACAAGTGTAAAACTGTTTGATTTACGGAAGCTGACGTCAAGTTTGCACACGTTTTATAGTCACACAGGACCTGTACTCCAGGTTGAATGGAGCCCTCATCACGAAAGTTTGTTGGCCTCTTCTTCTGAGGATAAAAGACTGATGGTTTGGGACCTATGCCGGATTGGTGATGAGCAAAATGAAGGGGATGCGTCTGATGGACCTCCTGAGTTGCTTTTTGTACATGGAGGTCACACTGCAAAGATTTCTGAGTTTTCTTGGAACCCTCAGGAGCCCTGGGTCATTGCCAGTGTTGCTGAGGATAACATTCTGCAAGTTTGGCAGATGGCTGAGAGCATTTACCGTGATGATTATGAAGATGAAAGTGATGGCGATGCATACGCTAACAACTAGCTGATGTCATTCGATGGTATGCTTCACCTGATCTTTACAGAAGCTGTCAAGGAGCTGTTGAGGCCACTTGCCTCTCTTTGCTAACCCTAATTCTAGGCATCAGTATAAAATAGTGAACAATGAAGGCCCGGCGGTAAAATTTATCTACCACTAGATTTATTAGTTTCTAGTGCTTTGAAGCACACAAACTAGCTTAAAATAAAATCAATTCTTTTATTTTCGATTTTGTCTCGATTCTTCTTTCCCTTTCATCTTCTTCTCTGAGGTGGCTGGAATTGGGGGCATGATGTTGATCAGGAACCGAGCATGGATACTCAGCAGAGCAAACTTCTGCGAAGACAGCCTACATCTGATTTTTAAGACCAACCGTTGAAACATTCCAGGTATTTATTTAGCCAATTAAGCTAAAAGAAGAAGATCAAAAAAAATAGAGCTGAATGGTAGTTGGCATAGCTGCAAGTAACAAATTCAATGAAAACTATAACTAGCCTGAATTACAATTAGCTTGCAGTTATACTAATAGTATTACCAACGATATTTGTAATCAATGGTATTGGATGCTCCCAGTGACTGTTTGAAGCGACTAGTCATTGATTGCTCTCAGTAGACTGGTTAAAGCAGCTAATGATGATTGCTTCTAACGATTGGTTGAAGCTGCCAATCCTTGGTTGCTTCTGGTAGGCTTCCAGATATTTGCAGTGATGTTTTTGTCACCCCTTCAAGTTGGAGGTTGGTGACCTGCCAAGTAAACTCAACTTGAATGATAATTTGGAGAATGCTAGTACTGGTAATGCCTTTGCGATGCTATTTGTAGTTTGGTTGATATGTATTTTGGTTTAATGAGATCTTGCATGCATTGGCCTCTCACTAAATGGTAATCAATGCCCAAGCATTTTGTTCGTTCATGAAAGATCAGATTTGCTGTTATGTGCAAGGCAGCTTGGTTATTAACCAAATGGAATGTGTGCTTATGAGAAAATTTGAAAATCTTGAAGGAGATATGATATCCATACCAGTTCGCATACTATTGATGCCACACATTTATATTCAGCTTCTGTTGAGGATCTTAATACAGTGGATTGTTGTTTTGTCTTCCATGATAGTAAGGTTGATCCTAGGAATGCACAGTAACTAGTTGATGACCTTCTCGTGCCTATACGTGTGCAATCAATGTTTTCGAATGTGAGGGCAAATAATTATTATATGTGGGGAATAATATTTTCTTAATCAGCTTCCTTTCAAGTATTTGACAAGATGCATTGCTATATCTCAATGTTACTGGCAAGAGTGTTGAATAAATTGACTTAACTGCTGCTGCATATTGTGAGATATATTGAG

Network for GWHGAAEX008964

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12265.7	CAF1C_H4-bd	13	78	4.90E-23
PF00400.31	WD40	157	192	0.13
PF00400.31	WD40	207	241	0.016
PF00400.31	WD40	247	285	2.50E-05
PF00400.31	WD40	292	329	0.0002
PF00400.31	WD40	350	385	0.045

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K10752	RBBP4, HAT2, CAF1, MIS16	Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.990
SRP064423	SRR2545915	Juvenile tuber	21.530
SRP108465	SRR5643513	five period of Gastrodia elata	18.710
	SRR5643514	five period of Gastrodia elata	14.770
	SRR5643515	five period of Gastrodia elata	15.390
	SRR5643524	five period of Gastrodia elata	14.790
	SRR5643525	five period of Gastrodia elata	16.410
	SRR5643528	five period of Gastrodia elata	15.000
	SRR5643658	five period of Gastrodia elata	14.530
	SRR5643659	five period of Gastrodia elata	17.290
	SRR5643660	five period of Gastrodia elata	15.780
	SRR5643661	five period of Gastrodia elata	15.420
	SRR5643662	five period of Gastrodia elata	14.280
	SRR5643663	five period of Gastrodia elata	13.820
	SRR5643664	five period of Gastrodia elata	13.390
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.310
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.970
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.940
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.980
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.930
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.730
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.650
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.320
SRP279888	Gastro	Gastrodia elata tuber	16.40
	Juven	Juvenile tuber	28.14
	Mother_Gastro	Mother tuber of Gastrodia elata	18.49
	Mother_Juven	Mother tuber of Juvenile	31.23