Detail information of GWHGAAEX008965/evm.TU.scaffold_23.280


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|695044467|ref|XP_009409986.1|1.61E-145PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9LZ00|MED4_ARATH8.00E-90Mediator of RNA polymerase II transcription subunit 4
trEMBLtr|G7LC42|G7LC42_MEDTR2.00E-117Vitamin-D-receptor interacting mediator subunit 4 {ECO:0000313|EMBL:AET03792.1}
TAIRAT5G028503.00E-89hydroxyproline-rich glycoprotein family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002566249586626846+
Transcript Sequence

Network for GWHGAAEX008965

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10018.8Med41252931.20E-10
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0003712Molecular Functiontranscription cofactor activity
GO:0016592Cellular Componentmediator complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms12.940
SRR2545915Juvenile tuber10.190
SRP108465SRR5643513five period of Gastrodia elata14.070
SRR5643514five period of Gastrodia elata9.220
SRR5643515five period of Gastrodia elata18.100
SRR5643524five period of Gastrodia elata12.100
SRR5643525five period of Gastrodia elata24.530
SRR5643528five period of Gastrodia elata29.320
SRR5643658five period of Gastrodia elata21.080
SRR5643659five period of Gastrodia elata25.970
SRR5643660five period of Gastrodia elata27.050
SRR5643661five period of Gastrodia elata32.410
SRR5643662five period of Gastrodia elata35.180
SRR5643663five period of Gastrodia elata22.310
SRR5643664five period of Gastrodia elata28.030
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.380
SRR6049655Rhizomagastrodiae_C368-T10_good_116.850
SRR6049656Rhizomagastrodiae_C368-T07_good_114.370
SRR6049657Rhizomagastrodiae_C368-T07_good_114.230
SRR6049658Rhizomagastrodiae_C368-T04_good_118.720
SRR6049659Rhizomagastrodiae_C368-T04_good_119.860
SRR6049660Rhizomagastrodiae_C368-T01_good_115.320
SRR6049661Rhizomagastrodiae_C368-T04_good_117.460
SRR6049662Rhizomagastrodiae_C368-T01_good_114.730
SRR6049663Rhizomagastrodiae_C368-T01_good_116.210
SRR6049664Rhizomagastrodiae_C368-T10_good_114.730
SRR6049665Rhizomagastrodiae_C368-T10_good_114.730
SRP279888GastroGastrodia elata tuber 27.27
JuvenJuvenile tuber9.83
Mother_GastroMother tuber of Gastrodia elata 33.32
Mother_JuvenMother tuber of Juvenile 31.60