Gene detail

Detail information of GWHGAAEX008966/evm.TU.scaffold_23.281

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1729	9.00E-170	FYVE finger containing protein
nr	gi\|743832993\|ref\|XP_010935133.1\|	0	PREDICTED: uncharacterized protein LOC105055113 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q0WUR5\|FAB1A_ARATH	3.00E-11	1-phosphatidylinositol-3-phosphate 5-kinase FAB1A
trEMBL	tr\|F6GZS4\|F6GZS4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46061.1}
TAIR	AT1G20110	9.00E-170	RING/FYVE/PHD zinc finger superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	6635841	6645723	+

Transcript Sequence
>GWHTAAEX008966 GCCGGAACAACAGATTCGACCCAACTATATCGCGATTCGTAGGGGAGCGCCCGACCTGCTTTGTAGCCGCAGATTTGAAGAAAGCGAAGAACAGAAGGCTTTTTATCTGCCAATCTTCCATCTGAATTCGCATCGGATTCTTCCCTAAGCTCAGATCGATCGACTTCTAACTTTAGACTTTAACCTTCCAATCTATCTCATTTTATCTATTCTCTTTTGAAGAGGATACTTTGATCGAGATGCAGCAAAGAGGCGACTATGGTTCCCAATACTACGCTCGCCAGTACCCTTCTTCCCATGTGAACCCTAATCCCAACGATTTCCCTCCTCCAAGTTCGATCCAGCCTTCGTACGCCTCCGCTCCGCCCTATTCCCATTATTCCTCCTCCAAATTCGATCCAGCCTCCACTTTTCCTCCCTTCACTCAACATCCGGATCCCAATCCAGCCGTGCCGCCATCAGCGCCATCGTATTCCCAGCCTCAATCCCATTTACAAGACCCGACATCGCAATTTCCTCCTTACGGGAACTACAGCTCTTCTCCCTTTCAGCCGGAACTGCCTTCTACTCAGCCAGGACATTCTTATTCTAACATTCAGCAACCTTCTTCCGACAATTACTATCCTTATGATTCTCGCCTCAATTATACACTCCCAAATCCCAATTCTGACCCCAATCAGAGGCCCGAGTTTAATTCCAATCCTCCAGTTGCACCCGTCTATGCACCTAATGACACCCCGTATCAAGATTCCGTCCCGAAAATCGATCATGGCGTTGGGTACTACAGTGAAAATACTGGAAAGTATGACATTAGTGCTACCGGATCTTTTGGGCAATCCCGACCTGGTTATGATCAGGATTATTATGAGAAGAAGCCCGAAAGGGATTTTCAATACGTGCACGCTGGTGCGCAGGATGATGATATAGGGCTAGGAGACGGTGTTTATGCTTATGATGGTGGCAGATCGGAGCCTTACGGTGCTCGTGGAACGATACCCAAGTCTTCGTCTTCGTCTTCATCAGTTTGGCATGGTTTTGATGATTATGGGAGGTCTACAAATTTTTCTTCCAATAGGAATGATCAACTTGGGAGTGCGGGTAAAATTGTTAGGGCAGTGCCAAAAGCAGAGTCTCAGCAGGATGTGAAGACTGGAGTGCTGAAATTCAGGGTTAAGCTTTTGCCTGAAGGATCAAGTGTTAGTACCGTTGATGTTCTTTGCCAGATTGGTTTGGATGGAATTCGTATGCTGGATCCTAGCACCAACAGGACCTTGAGGATTTATCCATTGGAACATGTAACAAGATGGGAGGTGCTGGATTCGTCTATATTTTGTTTTTGGTCTAAAAGTTCTGTTGATATCGAAGCCAAACGCATCAGGCTAAAATCTAACAGTTACACCACTAATACCATACTTGACACCGTAACTGCTGCATCTGTGCAGCTTAAAGAGATGGGTGGCAGTGATGCCGGACGAAGCAGGGAAAGTGCTGATGGTGTCAAACCTTCTGAACAGCCAAATGAAAAGAAAAAGGGTTTTGCTGACTGGATGAACATGATGAAACCAGGCAACGAGGAGAAAGACCATTGGGTTCCAGACGAAGCTGCTTTACAGTGTACATCTTGTGGGGTTGCTTTTGGACCTTTTGTTCGCAGGCATCATTGCAGAAATTGTGGTGATATCTTCTGTGACAAATGCAGCCAAGGAAGAATTGCTCTCACCACGGATGACAATGCTCAGCCAGTTCGTGTTTGCGATGGATGCATGGCAGAAGTGACTCAGAGCTTGAGCAGGGCAAAGGAAGCTGGCAACCGTTCCGCTATTATTCCTCAGAGTCATGAAGATCTTGCTAAGAAGCTTCAGGAGGAAATGGAGAGAAATCGCAGGGCGTCGTCTGGCTCTTCCAAAGCGTGCGATACATCGGGAAGGAAGATGAGGGAAGTGGCTTGCCCCATCTGCACTGTCCATTTGCAGGTGCAGGTTCCAAATTCAGGTTCCGAAACTATCGAATGCGGTGTCTGCCAGCATCCCTTTCTTGTGAGCGCGCACTGATCTCTCTTATAAATAAATATATTGTAAAAGCTGCTGCTTGTTTGTTGTATAAATAATATACGGATGTGTTGTGTTCATGCGAGAGTGAGCATTCTGATTTGGAATTTAAACCTTTTCCAACCCTAATTTAAAGGGGGTGTATTTGCGCAATTGTTGCTTTATAGCAAAAAACTGTTCTCTGTTTGCATGTCTACAAATCAAATTCTTTTGTTTACTTTTTGGGTTTTTCTCACACTG

Network for GWHGAAEX008966

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01363.20	FYVE	449	513	3.50E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	Molecular Function	metal ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	108.570
SRP064423	SRR2545915	Juvenile tuber	119.760
SRP108465	SRR5643513	five period of Gastrodia elata	112.670
	SRR5643514	five period of Gastrodia elata	105.130
	SRR5643515	five period of Gastrodia elata	109.340
	SRR5643524	five period of Gastrodia elata	118.210
	SRR5643525	five period of Gastrodia elata	149.330
	SRR5643528	five period of Gastrodia elata	159.010
	SRR5643658	five period of Gastrodia elata	180.880
	SRR5643659	five period of Gastrodia elata	96.640
	SRR5643660	five period of Gastrodia elata	96.510
	SRR5643661	five period of Gastrodia elata	98.590
	SRR5643662	five period of Gastrodia elata	90.920
	SRR5643663	five period of Gastrodia elata	98.430
	SRR5643664	five period of Gastrodia elata	100.270
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	132.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	173.630
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	118.540
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	133.080
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	109.360
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	127.200
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	111.560
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	113.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	99.980
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	97.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	123.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	123.640
SRP279888	Gastro	Gastrodia elata tuber	95.51
	Juven	Juvenile tuber	125.27
	Mother_Gastro	Mother tuber of Gastrodia elata	121.60
	Mother_Juven	Mother tuber of Juvenile	170.33