Detail information of GWHGAAEX008967/evm.TU.scaffold_23.282
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186681693|ref|YP_001864889.1| | 6.00E-36 | hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102] |
| KOG | KOG0282 | 0 | mRNA splicing factor |
| nr | gi|672172982|ref|XP_008806605.1| | 0 | PREDICTED: pre-mRNA-processing factor 17-like isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q8W1K8|MUT11_CHLRE | 7.00E-27 | Protein Mut11 |
| trEMBL | tr|V4SUW2|V4SUW2_9ROSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESR51638.1} |
| TAIR | AT1G10580 | 0 | Transducin/WD40 repeat-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 6645784 | 6650632 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008967
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 283 | 319 | 1.30E-05 |
| PF00400.31 | WD40 | 324 | 362 | 3.30E-08 |
| PF00400.31 | WD40 | 411 | 447 | 0.0011 |
| PF00400.31 | WD40 | 503 | 538 | 0.028 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12816 | CDC40, PRP17 | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 45.000 |
| SRR2545915 | Juvenile tuber | 30.260 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.040 |
| SRR5643514 | five period of Gastrodia elata | 22.460 | |
| SRR5643515 | five period of Gastrodia elata | 22.750 | |
| SRR5643524 | five period of Gastrodia elata | 22.690 | |
| SRR5643525 | five period of Gastrodia elata | 33.750 | |
| SRR5643528 | five period of Gastrodia elata | 32.920 | |
| SRR5643658 | five period of Gastrodia elata | 35.910 | |
| SRR5643659 | five period of Gastrodia elata | 34.020 | |
| SRR5643660 | five period of Gastrodia elata | 38.630 | |
| SRR5643661 | five period of Gastrodia elata | 39.490 | |
| SRR5643662 | five period of Gastrodia elata | 45.770 | |
| SRR5643663 | five period of Gastrodia elata | 38.300 | |
| SRR5643664 | five period of Gastrodia elata | 38.580 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 30.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 28.530 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 24.970 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 32.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 26.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 31.200 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 25.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.490 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.050 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 27.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 27.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 33.31 |
| Juven | Juvenile tuber | 36.89 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.09 | |
| Mother_Juven | Mother tuber of Juvenile | 31.33 |