Detail information of GWHGAAEX008969/evm.TU.scaffold_23.284


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|557694902|ref|YP_008797956.1|5.00E-12ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
KOGKOG04171.00E-60Ubiquitin-protein ligase
nrgi|566162504|ref|XP_006385788.1|1.46E-63hypothetical protein POPTR_0003s13600g [Populus trichocarpa]
Swissprottr|P35131|UBC8_ARATH3.00E-61Ubiquitin-conjugating enzyme E2 8
trEMBLtr|U5GJB3|U5GJB3_POPTR5.00E-64Uncharacterized protein {ECO:0000313|EMBL:ERP63585.1}
TAIRAT5G417001.00E-60ubiquitin conjugating enzyme 8

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002566811416691069-
Transcript Sequence

Network for GWHGAAEX008969

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.25UQ_con741494.40E-27
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.830
SRR2545915Juvenile tuber0.260
SRP108465SRR5643513five period of Gastrodia elata3.930
SRR5643514five period of Gastrodia elata2.770
SRR5643515five period of Gastrodia elata1.140
SRR5643524five period of Gastrodia elata2.020
SRR5643525five period of Gastrodia elata8.070
SRR5643528five period of Gastrodia elata5.980
SRR5643658five period of Gastrodia elata3.850
SRR5643659five period of Gastrodia elata0.300
SRR5643660five period of Gastrodia elata0.110
SRR5643661five period of Gastrodia elata0.110
SRR5643662five period of Gastrodia elata0.000
SRR5643663five period of Gastrodia elata0.000
SRR5643664five period of Gastrodia elata0.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_12.940
SRR6049655Rhizomagastrodiae_C368-T10_good_19.730
SRR6049656Rhizomagastrodiae_C368-T07_good_14.510
SRR6049657Rhizomagastrodiae_C368-T07_good_12.740
SRR6049658Rhizomagastrodiae_C368-T04_good_13.470
SRR6049659Rhizomagastrodiae_C368-T04_good_12.300
SRR6049660Rhizomagastrodiae_C368-T01_good_12.750
SRR6049661Rhizomagastrodiae_C368-T04_good_13.850
SRR6049662Rhizomagastrodiae_C368-T01_good_19.630
SRR6049663Rhizomagastrodiae_C368-T01_good_13.450
SRR6049664Rhizomagastrodiae_C368-T10_good_110.350
SRR6049665Rhizomagastrodiae_C368-T10_good_110.350
SRP279888GastroGastrodia elata tuber 0.33
JuvenJuvenile tuber0.06
Mother_GastroMother tuber of Gastrodia elata 6.64
Mother_JuvenMother tuber of Juvenile 0.33