Detail information of GWHGAAEX008970/evm.TU.scaffold_23.285
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 2.00E-55 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|672177075|ref|XP_008808621.1| | 0 | PREDICTED: leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 [Phoenix dactylifera] |
| Swissprot | tr|Q9SYQ8|CLV1_ARATH | 0 | Receptor protein kinase CLAVATA1 (Precursor) |
| trEMBL | tr|F6H1M3|F6H1M3_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB46051.1} |
| TAIR | AT1G75820 | 0 | Leucine-rich receptor-like protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 6691617 | 6696809 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008970
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 28 | 69 | 7.90E-09 |
| PF13855.5 | LRR_8 | 121 | 178 | 7.10E-07 |
| PF00560.32 | LRR_1 | 290 | 311 | 0.084 |
| PF13855.5 | LRR_8 | 531 | 590 | 2.00E-07 |
| PF07714.16 | Pkinase_Tyr | 692 | 968 | 1.00E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.330 |
| SRR2545915 | Juvenile tuber | 1.690 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.060 |
| SRR5643514 | five period of Gastrodia elata | 5.770 | |
| SRR5643515 | five period of Gastrodia elata | 3.190 | |
| SRR5643524 | five period of Gastrodia elata | 5.630 | |
| SRR5643525 | five period of Gastrodia elata | 35.500 | |
| SRR5643528 | five period of Gastrodia elata | 16.190 | |
| SRR5643658 | five period of Gastrodia elata | 10.510 | |
| SRR5643659 | five period of Gastrodia elata | 2.140 | |
| SRR5643660 | five period of Gastrodia elata | 0.810 | |
| SRR5643661 | five period of Gastrodia elata | 3.370 | |
| SRR5643662 | five period of Gastrodia elata | 5.000 | |
| SRR5643663 | five period of Gastrodia elata | 3.300 | |
| SRR5643664 | five period of Gastrodia elata | 6.870 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.660 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.160 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.020 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.590 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.840 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.940 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.940 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.80 |
| Juven | Juvenile tuber | 1.50 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.55 | |
| Mother_Juven | Mother tuber of Juvenile | 0.81 |