Gene detail

Detail information of GWHGAAEX008977/evm.TU.scaffold_23.292

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	2.00E-155	FOG: PPR repeat
nr	gi\|672122454\|ref\|XP_008784559.1\|	0	PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Phoenix dactylifera]
Swissprot	tr\|Q9LT48\|PP244_ARATH	9.00E-156	Pentatricopeptide repeat-containing protein At3g20730
trEMBL	tr\|B9HGU1\|B9HGU1_POPTR	0	Pentatricopeptide repeat-containing family protein {ECO:0000313\|EMBL:EEE91122.1}
TAIR	AT3G20730	2.00E-155	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	6878204	6881976	+

Transcript Sequence
>GWHTAAEX008977 CGGTGAACCAAACAGCCCCTTAAATTTCATTTGTTAGTGGAGCCGCGTGCTTAAGAAGCAAACAATACTTCCGATGAGGGGGTTGATATTGCTGCTGTGATGGTATGGAGTCAGTTTCGCTTGGTAGGAGAATCCAACATCTGTGCTATTGGTATGTTGAAGATCCCTCAAGAGCAAATTTCTGACATTTCTGTTGGCTATGAGGATGAGCTGAATTTTTTTCTGGTTTCACCCCTGTGAATAGTTCCCACTATATTGCAAGCAAAATTGCTATAAAATTTGAATGCCATGGAATTGATTATATATGCTATATTGAAGCTAGAAATTCAGATGCATCTCGATGAGAAAGTGGTAGCTGTTTCTCATTTTGTTGATATAGAAGGCCACATTGCTGAGTGTTTCCTGGGTATCACACATGTGAAGTGTTGAAGAAGCAATTATACAATGACGTTGAGTTACTGCCAGCTAAACAAACACTAATTTGGAAATTCTTAACATAGGAAAATTCTATCCAAAGAGTTGGGGATACTTATTGAAGATCTCATGTATGGGGGTGTTCACTGACACCCTTTAATCACAGTAGCTGCCACAGGTTTTGTTTGTAGCTCAAGCTGGAATTTCTCTTCGCTTTGCAGACACTAAGGCATTGTGAGCTCTCCTATTTTCTAATACGAAAATAAGAAACGATGACATTGTGTGTTAAGTATCGATGGGCAGACTGTCGGCTTAAAGAAGCCCTTGAAGCCTTGTGCTCTTACCAGACCTCATTAAGCCCTTCCAGTTGCTCAGTTCTTCTTCACCGTTGTACCCATTTCAATGCCAAGTATGAAGGAAAAATTCTTCATGATCATATTTTAGCTCATGGTTATCCTGCAAATGTTCACCTGAACACTAGATTTATCATCTTTTTTGTTAAAACAGGAGATGTGGTTTCTGCTCGAAAGGTATTTGATGGGATGCCTGTAAAAGGTATCGTCTCTTGGACTGCATTAATCTCTGGATACACACAAAATGGCTTCTTGTATGAGGCTCTTGACGTATTTAGTTTGATGCATCGAGAGTGTAACAAGGCCAATCAATTCACTTATGCTAGTGTTCTTAAGGCATGCATTGGAATAGGTTGCATAAGAAGTGGGCTGCAGATTCAATGTTGCATTGAGAAGAGCATATTTGTGAAGAATTTGTATGTTAGTTGTGCACTTTTGGACTTGCACTTCAAATGCGGAGTGCTTCAGGATGCTCAGAGTTTGTTTTGGAGAATGGATGAAAGAGATGTTGTATTGTGGAATTCTATGATTGGAGGGCATGCTCTTCTTGGAATGACTGCTGATTCATTTGAATTGTTTATCTCGATGTTGAAAGAAGGTATGATGCCAGACCATTTCACCTTTGCAAGCATCTTGAAGGCATGCAGTTTAGTAAAGGATTTCTTAAATGCTGATAAGATACATTCATTCATTATCAAATCAGGATTTTCAAATCATTATGCTGTCTCTGGATCACTTATTGATGCATATGTAAAATGTAGGAAAATACATACAGCCAGACGGATCTACAACTTTTTGCCAAATCCAGACATAGTTTCCTGCACTACATTGATCTCTGGGTATTCGTTAAATACAGGTTATATCACGGATGCTTTGAGTCTTTATTGTAAAATCAATAAAGTAGGAATGCAAATTGATAATATCATTCTATGCTCTATGCTCAACCTTAGTGCCAATGAGGCCTTTTTGGACCTCGGAAAGCAGATCCATGCTCGTGCAATGAAAAATAAATCTAACCATGATGTAGCTTTGCACAATGCACTTGTTGACATGTATGCCAAATCTGGGGAGCTCAAAGATGCTCGTCTTGCTTTTGATGAGATGAAAAGTAAAAATGTGATTTCATGGACATCACTAATTGCTGGTTATGGCAAACATGGCCAAGGTGAAAATGCAGTGACACTCTTTACAGAGATGGAGGATAATGGGATGAAACCCAATGATGTTACATTTCTTTCCCTTATTTCTGCATGCAGTCATTCCGGTCTCACTAGCAAAGGAATGGATTTCTTTCATTTGATGGTAAACAAATATGCTATCCGACCTAGATGTGAGCACTACTCTTGTGTTGTTGATCTTCTTGGGCGTGGAGGTCTAATCAATGAAGCTTGTAGGTTTGTAGAGAAAATGAATATTAAGCCCAACATGTCAATTTGGGGTGCAATGCTTGGGGCTTGTAGGATTCATGACAATATATCCATTGGAAAAGTTGTTGCAGGCAATCTTATAACATTATATCCCCAAAGATCAGTGAATTATGTTGTTCTCGCAAATTTATACGCAACAACTAGTTTATGGGAAAATGCTAGGAGGACAAGACAGTTTATGGAATCAAAATCATTGTGCCAGAAAGATGCAGGGAGTAGCTTTGTTTTTCTCTACAAGAGTAATTTATTATAAACTCTTTCCTTGATGGCATGATTTGAAATGGTGTGGATTCATTGCTTCCTTGTTTGATCTAAGGCATAAGAAAAGGTATAGGAGTGATGCTCACCAATTGTAGCATTTTGACATAAATATAGAGAGAGGATTATAATATGCTTTTTCTTGGCATTGTTCACTAACATGTGCATGTTATTCTACAAGATTTTGAAAACGATTTAAAATTTTATTTAATAATGATTTTAGTGTCCACGGTGCT

Network for GWHGAAEX008977

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13041.5	PPR_2	95	141	3.60E-08
PF13041.5	PPR_2	196	242	1.10E-08
PF13041.5	PPR_2	398	446	1.70E-13
PF01535.19	PPR	473	497	1.3

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.840
SRP064423	SRR2545915	Juvenile tuber	11.660
SRP108465	SRR5643513	five period of Gastrodia elata	3.410
	SRR5643514	five period of Gastrodia elata	2.790
	SRR5643515	five period of Gastrodia elata	2.120
	SRR5643524	five period of Gastrodia elata	3.380
	SRR5643525	five period of Gastrodia elata	2.810
	SRR5643528	five period of Gastrodia elata	2.180
	SRR5643658	five period of Gastrodia elata	1.720
	SRR5643659	five period of Gastrodia elata	1.910
	SRR5643660	five period of Gastrodia elata	1.850
	SRR5643661	five period of Gastrodia elata	2.240
	SRR5643662	five period of Gastrodia elata	2.140
	SRR5643663	five period of Gastrodia elata	2.850
	SRR5643664	five period of Gastrodia elata	1.830
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.470
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.280
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.350
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.730
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.930
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.840
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.840
SRP279888	Gastro	Gastrodia elata tuber	3.64
	Juven	Juvenile tuber	3.20
	Mother_Gastro	Mother tuber of Gastrodia elata	2.69
	Mother_Juven	Mother tuber of Juvenile	2.91