Detail information of GWHGAAEX008980/evm.TU.scaffold_23.295
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2590 | 6.00E-21 | RNA-binding protein LARP/SRO9 and related La domain proteins |
| nr | gi|720032152|ref|XP_010266026.1| | 1.22E-42 | PREDICTED: la-related protein 1C-like isoform X2 [Nelumbo nucifera] |
| Swissprot | tr|Q8RWR2|LRP1B_ARATH | 4.00E-29 | La-related protein 1B |
| trEMBL | tr|M0S397|M0S397_MUSAM | 1.00E-42 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P26400_001} |
| TAIR | AT5G66100 | 6.00E-21 | winged-helix DNA-binding transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 6910279 | 6917827 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008980
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05383.16 | La | 265 | 320 | 4.30E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006396 | Biological Process | RNA processing |
| GO:0003723 | Molecular Function | RNA binding |
| GO:1990904 | Cellular Component | ribonucleoprotein complex |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.440 |
| SRR2545915 | Juvenile tuber | 10.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.150 |
| SRR5643514 | five period of Gastrodia elata | 4.730 | |
| SRR5643515 | five period of Gastrodia elata | 3.680 | |
| SRR5643524 | five period of Gastrodia elata | 4.080 | |
| SRR5643525 | five period of Gastrodia elata | 1.650 | |
| SRR5643528 | five period of Gastrodia elata | 2.200 | |
| SRR5643658 | five period of Gastrodia elata | 1.230 | |
| SRR5643659 | five period of Gastrodia elata | 5.170 | |
| SRR5643660 | five period of Gastrodia elata | 6.000 | |
| SRR5643661 | five period of Gastrodia elata | 4.290 | |
| SRR5643662 | five period of Gastrodia elata | 5.980 | |
| SRR5643663 | five period of Gastrodia elata | 5.510 | |
| SRR5643664 | five period of Gastrodia elata | 5.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.450 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.510 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.930 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.240 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.730 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.75 |
| Juven | Juvenile tuber | 4.50 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.05 | |
| Mother_Juven | Mother tuber of Juvenile | 2.70 |