Detail information of GWHGAAEX008985/evm.TU.scaffold_23.301
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|550991245|ref|YP_008681855.1| | 2.00E-22 | nitric oxide reductase-like protein [Candidatus Symbiobacter mobilis CR] |
| KOG | KOG1808 | 0 | AAA ATPase containing von Willebrand factor type A (vWA) domain |
| nr | gi|743826064|ref|XP_010933177.1| | 0 | PREDICTED: midasin [Elaeis guineensis] |
| trEMBL | tr|J3N351|J3N351_ORYBR | 0 | Midasin {ECO:0000256|PIRNR:PIRNR010340} |
| TAIR | AT1G67120 | 0 | ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000025 | 7024341 | 7124531 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008985
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07728.13 | AAA_5 | 152 | 275 | 2.10E-13 |
| PF07728.13 | AAA_5 | 472 | 521 | 9.30E-07 |
| PF07728.13 | AAA_5 | 625 | 711 | 1.60E-06 |
| PF07728.13 | AAA_5 | 879 | 1015 | 1.20E-22 |
| PF07728.13 | AAA_5 | 1179 | 1226 | 1.80E-05 |
| PF07728.13 | AAA_5 | 1303 | 1402 | 9.10E-15 |
| PF07728.13 | AAA_5 | 1598 | 1737 | 5.70E-17 |
| PF07728.13 | AAA_5 | 2069 | 2153 | 9.70E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14572 | MDN1, REA1 | Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000027 | Biological Process | ribosomal large subunit assembly |
| GO:0016887 | Molecular Function | ATPase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 38.540 |
| SRR2545915 | Juvenile tuber | 32.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.660 |
| SRR5643514 | five period of Gastrodia elata | 3.520 | |
| SRR5643515 | five period of Gastrodia elata | 4.040 | |
| SRR5643524 | five period of Gastrodia elata | 2.790 | |
| SRR5643525 | five period of Gastrodia elata | 4.860 | |
| SRR5643528 | five period of Gastrodia elata | 2.800 | |
| SRR5643658 | five period of Gastrodia elata | 2.910 | |
| SRR5643659 | five period of Gastrodia elata | 5.610 | |
| SRR5643660 | five period of Gastrodia elata | 7.130 | |
| SRR5643661 | five period of Gastrodia elata | 4.990 | |
| SRR5643662 | five period of Gastrodia elata | 4.110 | |
| SRR5643663 | five period of Gastrodia elata | 5.540 | |
| SRR5643664 | five period of Gastrodia elata | 6.480 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.330 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.230 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.810 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.890 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.480 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.960 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.460 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.770 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.75 |
| Juven | Juvenile tuber | 7.32 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.89 | |
| Mother_Juven | Mother tuber of Juvenile | 8.34 |