Detail information of GWHGAAEX008990/evm.TU.scaffold_23.307


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428305262|ref|YP_007142087.1|8.00E-69ATP-dependent Clp protease proteolytic subunit [Crinalium epipsammum PCC 9333]
KOGKOG08409.00E-91ATP-dependent Clp protease, proteolytic subunit
nrgi|645265894|ref|XP_008238370.1|1.35E-153PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Prunus mume]
Swissprottr|Q8LB10|CLPR4_ARATH1.00E-144ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic (Precursor)
trEMBLtr|M5WA43|M5WA43_PRUPE9.00E-149ATP-dependent Clp protease proteolytic subunit {ECO:0000256|RuleBase:RU003567}
TAIRAT4G170409.00E-91CLP protease R subunit 4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002571951457224329-
Transcript Sequence

Network for GWHGAAEX008990

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00574.22CLP_protease1042841.80E-49
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01358clpP, CLPP Cell cycle - Caulobacter map04112
Longevity regulating pathway - wormmap04212

Gene Ontology

GO term OntologyName
GO:0006508Biological Processproteolysis
GO:0004252Molecular Functionserine-type endopeptidase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms55.930
SRR2545915Juvenile tuber63.900
SRP108465SRR5643513five period of Gastrodia elata54.620
SRR5643514five period of Gastrodia elata48.980
SRR5643515five period of Gastrodia elata58.910
SRR5643524five period of Gastrodia elata46.340
SRR5643525five period of Gastrodia elata53.610
SRR5643528five period of Gastrodia elata52.300
SRR5643658five period of Gastrodia elata44.110
SRR5643659five period of Gastrodia elata71.760
SRR5643660five period of Gastrodia elata74.610
SRR5643661five period of Gastrodia elata83.190
SRR5643662five period of Gastrodia elata85.450
SRR5643663five period of Gastrodia elata80.810
SRR5643664five period of Gastrodia elata86.790
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_159.260
SRR6049655Rhizomagastrodiae_C368-T10_good_148.880
SRR6049656Rhizomagastrodiae_C368-T07_good_149.260
SRR6049657Rhizomagastrodiae_C368-T07_good_162.450
SRR6049658Rhizomagastrodiae_C368-T04_good_153.070
SRR6049659Rhizomagastrodiae_C368-T04_good_156.990
SRR6049660Rhizomagastrodiae_C368-T01_good_151.430
SRR6049661Rhizomagastrodiae_C368-T04_good_147.560
SRR6049662Rhizomagastrodiae_C368-T01_good_144.870
SRR6049663Rhizomagastrodiae_C368-T01_good_146.200
SRR6049664Rhizomagastrodiae_C368-T10_good_154.210
SRR6049665Rhizomagastrodiae_C368-T10_good_154.210
SRP279888GastroGastrodia elata tuber 74.11
JuvenJuvenile tuber73.78
Mother_GastroMother tuber of Gastrodia elata 39.12
Mother_JuvenMother tuber of Juvenile 53.50