Gene detail

Detail information of GWHGAAEX008994/evm.TU.scaffold_23.312

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	1.00E-153	FOG: PPR repeat
nr	gi\|743854306\|ref\|XP_010940859.1\|	0	PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Elaeis guineensis]
Swissprot	tr\|Q9FNN7\|PP371_ARATH	3.00E-154	Pentatricopeptide repeat-containing protein At5g08510
trEMBL	tr\|B9GR57\|B9GR57_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE80700.2}
TAIR	AT5G08510	1.00E-153	Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000025	7456524	7543790	-

Transcript Sequence
>GWHTAAEX008994 ATGAACCACATCAAGCAAATCCATGCCCACGCCCTCCATCATGGCTTTGATCAGACCGGCCTCCTTCTTGATCTTCTCCTTCGCATCCCAAACCTTCAGTATGCTCGTCGTCTCATCGACTCCCTCCCCTTGCCTCCTCCTATCTTTTTTTGCAACAAGCTTCTCCGCTCTTACTCTGCCTTACCCCAAAGCTTCTGCCTTTGCATTTCTCTTTTCTCCTCCATGTGCGCCCAACTACAATATCCCCCCCCAAACCTTTATTCATTCACTTTCACCATCTCGGCATGCGCCACTTCTTTTAGCCCCTTCTATGGCCGTGCCCTCCATGCCCTTCTTCTCAAAACAGGCTTCCCCTTGGACCCCTTTGTCTCCACCTCCCTCGTCCACATGTACTCCAAGACTGGCGACCTGCCCTCTGCTCGCAACTTGTTCGAGGATTTGTGTCATCCAGACACTGCGATGTGGAACTCCATGATCACTGCCTATGCGAGGAGTGGCGACCTCACTGCTGCGAGGGAGCTGTTTGAAACAATGCCTACGAGGAATGTGATCTCTTGGACATCGTTGATTTCTGGATATTCCCAAAATGGGATGTATGGGGAGTCCATTGAGATGTTTACGAGGATGTGGAAAGAAGGTGAGATGAGGCCAAATGAGGTGACCCTGACCAGCATCCTCCAGGCCTGTGCCAATGCTGGGGCCATGGAGTTGGGAGAGCAGATTGAAACTTTTGCAAGGGAGAATGGTCTTTTAGAAAACATGTTTGTGGGGAGCGCATTGGTGGAGATGTATGCAAAATGTGGCGATGTTGATCGGGCGATGGCAGTATTCCGAGAAATTGGCGGGCAGAAGAATATATGCTCATGGAACTCAATGATCATGGGTTTGGCTGTGCATGGCAGGTGGAGAGAGAGTCTTCAACTTTTCCATGTGATGAAGTATAAAGGTATCATCCCTGTTGACATAACATTTACTGGTGTTCTCACGGCATGCTCTCATGGAGGATTGGTGGAAGAAGGGAAGCTTCTCTTTCAATACATGGAGAAAAGACTACTCATTTCTCCGAAGATTCAACACTATGGCTGCATGGTTGATCTCTTTGGACGTGCTGGTCTTCTAAATGAAGCATACACCTTCATAAAAAGAATGCCAATAGAGCCTGATGCTGCTATTTGGGGGGCTTTGCTTGCAGCCTGTAGCTTACATAGAAACTTGGAGCTTGCAGAAGTTGCTTCTGAGGCCCTTTTCAAGATGGAGCCTTGGAACAGTGGAAACTATGTCATTCTAGCCAATATATATGCCTCTGCAGGTTGTTGGGATTGTGTTTCTAAAGTCTGGAAGACGGTAAAAGGGAGACAGCAGAAGAAGGAGGCTGCCTATAGTCTTTTTGAATTGAGTGGGAAAATGCACAAATTCCTTGTGGAAGATAAGTCACACCCAAATTCTAAAGAAATATATACATTGTTAGAAATGTTCTGTGGTGAAGGTAAACTGTGCACCAGATCATACTGTTTGATTGGGTATGCGTTTTTAGCAATATATTTGTACCCGCTTCTTGCTGTGTCGGTGGCAGTACCTTATTCCAACTGTTATGCCCTTGATAACAGCAGCCATCTTGTTGACTTTACAGATTGGATTGGTCATGTTTTCACTCATGAACAAAAGGATGGTGATTTGGTTGTTCGATTTTGTAAAGATGTGGAATTCCGATCTCAGATGGGATACATTGATTTTGGCCGTTATGAAACTTCTAGCTATTTTGTAGCCGGCTCAGGATCTTTAAACTTTATTCAGGGATTTTTCAATGGAGACCTTGCAAATTGTGAACATATATTTGACAAAATGGGCCGCACAGCTCAGGTAAACATAATATGTGGAGACTGTTTAAGCCAAGGGTGTAAAGATGAATTTGGTTGTGTTTGTGGCGTAACCTATGATGCATCAAAGTGCAGCGTTCTTGTTGAAATTGCAATTCCATGCGCTAAACAAGGATCTCTAATATTTGAAGGTTTCACTATTGGTTTTCATCCTCGCTCATGGGAAGTTGTTTACAATGGCTTGACTCAAAGAGGTTTTGACAAACCTCATCATGAATTCAGCTTTGGAACTGACCAATCGCAAGTAGCTCTTTATTTTACTGCAATTTCTACTCTTTCCAGTCGTGTCGGTAAACCATCTTATAAGGTCAGTCCTGATGAAGGGCTTGAGATTATGTTGTCAGGTTCAGCAGCTAGTGGCATAGCCCCTACAACTTTATCTCCTTCAGTTCTTTTAGTGAATTGGAGATGTGAAAGAATTCAAGTTAACCCTTATGAAATTTACATATCAATTCCGGTTGAGGGTTATGATCCAATTGAATTCACTCTTACAAAATTTTGTGAATATGTACAAGGTAGAGAAGATGATTGGTTAAGAGGGTGGGCCACGTTTGGAATTGTGTCCCTTGTGTTAGTTTCCCTTTTAATTTTATCGTGCTGTGGAGGTTTCATTTACAAGACACGCATAGAACATCAGCATGGTCTTTATGCTCTACCTGGTGTAACTTTTCTATCGGTCTGCTTGGAATCTGTAAATGGATCACAAGACTACCTTCTAGGAGATGGTGAAACAGAAAGGACCGATGAAAGAAGATATGGATCGATATAG

Network for GWHGAAEX008994

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	125	147	0.97
PF12854.6	PPR_1	148	178	1.50E-05
PF13041.5	PPR_2	181	231	1.30E-08
PF01535.19	PPR	259	280	0.093
PF13041.5	PPR_2	284	332	2.80E-08
PF01535.19	PPR	360	383	0.11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	50.670
SRP064423	SRR2545915	Juvenile tuber	56.180
SRP108465	SRR5643513	five period of Gastrodia elata	31.660
	SRR5643514	five period of Gastrodia elata	29.960
	SRR5643515	five period of Gastrodia elata	36.320
	SRR5643524	five period of Gastrodia elata	29.600
	SRR5643525	five period of Gastrodia elata	35.390
	SRR5643528	five period of Gastrodia elata	33.630
	SRR5643658	five period of Gastrodia elata	30.290
	SRR5643659	five period of Gastrodia elata	36.390
	SRR5643660	five period of Gastrodia elata	46.800
	SRR5643661	five period of Gastrodia elata	35.390
	SRR5643662	five period of Gastrodia elata	35.010
	SRR5643663	five period of Gastrodia elata	40.490
	SRR5643664	five period of Gastrodia elata	43.900
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	48.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	32.120
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	40.040
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	57.400
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	58.850
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	66.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	52.020
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	53.390
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	43.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.560
SRP279888	Gastro	Gastrodia elata tuber	61.84
	Juven	Juvenile tuber	69.75
	Mother_Gastro	Mother tuber of Gastrodia elata	42.50
	Mother_Juven	Mother tuber of Juvenile	54.44