Detail information of GWHGAAEX008995/evm.TU.scaffold_230.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08913.00E-14DNA-dependent protein kinase
nrgi|672133176|ref|XP_008790196.1|6.97E-85PREDICTED: uncharacterized protein LOC103707474 isoform X3 [Phoenix dactylifera]
trEMBLtr|A0A067LFY2|A0A067LFY2_JATCU2.00E-77Uncharacterized protein {ECO:0000313|EMBL:KDP46188.1}
TAIRHS187657393.00E-14Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000227964632862+
Transcript Sequence

Network for GWHGAAEX008995

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02260.19FATC3283551.60E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08873SMG1 mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.000
SRR2545915Juvenile tuber3.360
SRP108465SRR5643513five period of Gastrodia elata1.900
SRR5643514five period of Gastrodia elata1.920
SRR5643515five period of Gastrodia elata1.230
SRR5643524five period of Gastrodia elata1.160
SRR5643525five period of Gastrodia elata2.850
SRR5643528five period of Gastrodia elata1.670
SRR5643658five period of Gastrodia elata1.700
SRR5643659five period of Gastrodia elata1.080
SRR5643660five period of Gastrodia elata1.700
SRR5643661five period of Gastrodia elata1.350
SRR5643662five period of Gastrodia elata0.890
SRR5643663five period of Gastrodia elata1.020
SRR5643664five period of Gastrodia elata0.620
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_12.490
SRR6049655Rhizomagastrodiae_C368-T10_good_11.350
SRR6049656Rhizomagastrodiae_C368-T07_good_12.910
SRR6049657Rhizomagastrodiae_C368-T07_good_13.160
SRR6049658Rhizomagastrodiae_C368-T04_good_13.550
SRR6049659Rhizomagastrodiae_C368-T04_good_14.100
SRR6049660Rhizomagastrodiae_C368-T01_good_14.700
SRR6049661Rhizomagastrodiae_C368-T04_good_14.560
SRR6049662Rhizomagastrodiae_C368-T01_good_12.620
SRR6049663Rhizomagastrodiae_C368-T01_good_13.320
SRR6049664Rhizomagastrodiae_C368-T10_good_12.190
SRR6049665Rhizomagastrodiae_C368-T10_good_12.190
SRP279888GastroGastrodia elata tuber 9.32
JuvenJuvenile tuber8.47
Mother_GastroMother tuber of Gastrodia elata 10.80
Mother_JuvenMother tuber of Juvenile 9.16