Detail information of GWHGAAEX009004/evm.TU.scaffold_230.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0765 | 8.00E-157 | Predicted mitochondrial carrier protein |
| nr | gi|672125224|ref|XP_008786026.1| | 0 | PREDICTED: solute carrier family 25 member 44 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9FHX2|MFL1_ARATH | 1.00E-24 | Protein MITOFERRINLIKE 1, chloroplastic (Precursor) |
| trEMBL | tr|M0SU51|M0SU51_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P32890_001} |
| TAIR | AT5G15640 | 8.00E-157 | Mitochondrial substrate carrier family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000227 | 179156 | 219973 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009004
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00153.26 | Mito_carr | 35 | 105 | 7.70E-16 |
| PF00153.26 | Mito_carr | 124 | 212 | 1.50E-17 |
| PF00153.26 | Mito_carr | 236 | 317 | 4.60E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.540 |
| SRR2545915 | Juvenile tuber | 9.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.510 |
| SRR5643514 | five period of Gastrodia elata | 11.870 | |
| SRR5643515 | five period of Gastrodia elata | 13.600 | |
| SRR5643524 | five period of Gastrodia elata | 13.100 | |
| SRR5643525 | five period of Gastrodia elata | 10.520 | |
| SRR5643528 | five period of Gastrodia elata | 7.280 | |
| SRR5643658 | five period of Gastrodia elata | 8.240 | |
| SRR5643659 | five period of Gastrodia elata | 12.100 | |
| SRR5643660 | five period of Gastrodia elata | 11.950 | |
| SRR5643661 | five period of Gastrodia elata | 13.870 | |
| SRR5643662 | five period of Gastrodia elata | 15.310 | |
| SRR5643663 | five period of Gastrodia elata | 13.170 | |
| SRR5643664 | five period of Gastrodia elata | 12.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.530 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.500 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.440 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.080 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.350 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.030 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.030 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.55 |
| Juven | Juvenile tuber | 16.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.66 | |
| Mother_Juven | Mother tuber of Juvenile | 18.50 |