Detail information of GWHGAAEX009005/evm.TU.scaffold_230.11


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|148655047|ref|YP_001275252.1|1.00E-28WD-40 repeat-containing protein [Roseiflexus sp. RS-1]
KOGKOG06400mRNA cleavage stimulating factor complex; subunit 1
nrgi|672125220|ref|XP_008786024.1|0PREDICTED: cleavage stimulation factor subunit 1 isoform X1 [Phoenix dactylifera]
Swissprottr|Q8L4J2|CTF50_ARATH0Cleavage stimulation factor subunit 50 {ECO:0000303|PubMed:12379796}
trEMBLtr|A0A067K5H3|A0A067K5H3_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP31372.1}
TAIRAT5G609400Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000227221345291032+
Transcript Sequence

Network for GWHGAAEX009005

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD401141484.30E-06
PF00400.31WD401702051.90E-05
PF00400.31WD402212420.11
PF00400.31WD402692950.036
PF00400.31WD403003380.00041
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K14406CSTF1 mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.090
SRR2545915Juvenile tuber26.730
SRP108465SRR5643513five period of Gastrodia elata15.160
SRR5643514five period of Gastrodia elata16.720
SRR5643515five period of Gastrodia elata13.630
SRR5643524five period of Gastrodia elata15.560
SRR5643525five period of Gastrodia elata12.630
SRR5643528five period of Gastrodia elata12.810
SRR5643658five period of Gastrodia elata15.220
SRR5643659five period of Gastrodia elata14.740
SRR5643660five period of Gastrodia elata17.840
SRR5643661five period of Gastrodia elata15.360
SRR5643662five period of Gastrodia elata14.710
SRR5643663five period of Gastrodia elata14.830
SRR5643664five period of Gastrodia elata16.930
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.000
SRR6049655Rhizomagastrodiae_C368-T10_good_114.130
SRR6049656Rhizomagastrodiae_C368-T07_good_120.300
SRR6049657Rhizomagastrodiae_C368-T07_good_124.890
SRR6049658Rhizomagastrodiae_C368-T04_good_118.710
SRR6049659Rhizomagastrodiae_C368-T04_good_120.960
SRR6049660Rhizomagastrodiae_C368-T01_good_122.020
SRR6049661Rhizomagastrodiae_C368-T04_good_119.820
SRR6049662Rhizomagastrodiae_C368-T01_good_116.760
SRR6049663Rhizomagastrodiae_C368-T01_good_118.960
SRR6049664Rhizomagastrodiae_C368-T10_good_119.830
SRR6049665Rhizomagastrodiae_C368-T10_good_119.830
SRP279888GastroGastrodia elata tuber 18.90
JuvenJuvenile tuber21.02
Mother_GastroMother tuber of Gastrodia elata 8.09
Mother_JuvenMother tuber of Juvenile 11.24